PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028436m | ||||||||
Common Name | CARUB_v10028436mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27336.8 Da PI: 5.2205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.6e-14 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd + G + +W+ +++ g++R++k+c++rw +yl Carubv10028436m 15 KGPWTAEEDGKLVDFLRTRGDRggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++ Carubv10028436m 71 RGLFTEEEIQLVIDLHARLGNR-WSKIAIELP-GRTDNDIKNYWNTH 115 788*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 6 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.886 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.88E-24 | 12 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-7 | 14 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-5 | 17 | 65 | No hit | No description |
PROSITE profile | PS51294 | 27.068 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 71 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-12 | 74 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGGRKPCCDE VGLRKGPWTA EEDGKLVDFL RTRGDRGGWC WRDVPKLAGL RRCGKSCRLR 60 WTNYLRPDLK RGLFTEEEIQ LVIDLHARLG NRWSKIAIEL PGRTDNDIKN YWNTHIKRKL 120 IRMGIDPNTH RRFEFNQQKV NEEEKVLLVN SPKPPSQPEV PLVLQNDTSA GNLNNLADVD 180 GDDDQPWSFL MENDGVVGGG GGAGELTMLL SGDISSSCSS SSSLWLKYGD LGYEDLELGC 240 FDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 13 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00577 | DAP | Transfer from AT5G62320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028436m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF199026 | 0.0 | AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds. | |||
GenBank | AY519644 | 0.0 | AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282174.1 | 1e-178 | transcription factor MYB20 | ||||
Swissprot | Q50EX6 | 4e-66 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | R0F0I2 | 1e-177 | R0F0I2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282174.1 | 1e-178 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62320.1 | 1e-132 | myb domain protein 99 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028436m |
Entrez Gene | 17876369 |
Publications ? help Back to Top | |||
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