PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028346m | ||||||||
Common Name | CARUB_v10028346mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 684aa MW: 76101.2 Da PI: 5.915 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k +++t++q++eLe++F+ +++p++++r eL kkl L+ +q+k+WFqNrR+++k Carubv10028346m 61 RTKYHRHTSYQIQELESFFKVCPHPNEKQRLELGKKLTLESKQIKFWFQNRRTQMK 116 3455678999*******************************************999 PP | |||||||
2 | START | 149.1 | 3.9e-47 | 227 | 431 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 la ea++e++k+ +++ p+W + s ++e++ e +r+sg+v +++ lve l+d++ +W e+++ a+t+evis+g Carubv10028346m 227 LAMEAMEEFLKLEELDNPLWNSKS----EKESMNHNE-----YRSSSRESGLVLINSVALVEALMDTN-KWAEMFEcivaVASTVEVISNGsdg 310 5789****************9999....444444442.....22347*********************.************************* PP ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 g lqlm+ae+q++splvp + f+Ry++q+g+g w++vdvS d +++ ++ +s+ ++++pSg++i++ +ng skvtw+eh +++++++ Carubv10028346m 311 srnGSLQLMQAEFQVMSPLVPiKQEKFLRYCKQHGDGLWAVVDVSYDINREDENLKSYGGSKKFPSGCIIQDIGNGCSKVTWIEHLEYEESHIN 404 ***************************************************999***************************************9 PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +++ +l++s++a ga +w+atlqrqce+ Carubv10028346m 405 SVY-QLLGSSVALGATKWLATLQRQCES 431 998.689999****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 45 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.46E-18 | 47 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.7E-15 | 57 | 122 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.86 | 58 | 118 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-16 | 61 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-15 | 61 | 118 | No hit | No description |
PROSITE profile | PS50848 | 39.501 | 217 | 434 | IPR002913 | START domain |
CDD | cd08875 | 2.93E-100 | 222 | 430 | No hit | No description |
SuperFamily | SSF55961 | 1.51E-27 | 223 | 432 | No hit | No description |
SMART | SM00234 | 3.1E-34 | 226 | 431 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-40 | 227 | 431 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.36E-18 | 449 | 670 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MNGHLDVDMS RGDFNPSFFH GRLKDDEFES RSLSDDDSFD AMSGDESKQE EQRPKKKKKK 60 RTKYHRHTSY QIQELESFFK VCPHPNEKQR LELGKKLTLE SKQIKFWFQN RRTQMKTQLE 120 RHENVILRQE NEKLRVENGF LKESMRGSLC IDCGGAVIPG EVSFEQHQLR IENAKLKDEL 180 DRICALANRF IGGSISLEQP SNGGIGSQHL PIGNGFSGGT SQMFMDLAME AMEEFLKLEE 240 LDNPLWNSKS EKESMNHNEY RSSSRESGLV LINSVALVEA LMDTNKWAEM FECIVAVAST 300 VEVISNGSDG SRNGSLQLMQ AEFQVMSPLV PIKQEKFLRY CKQHGDGLWA VVDVSYDINR 360 EDENLKSYGG SKKFPSGCII QDIGNGCSKV TWIEHLEYEE SHINSVYQLL GSSVALGATK 420 WLATLQRQCE SFTSLLSSQD HTGLSLAGTK SILKLAQRMK LNFYSGITAS SVHKWEKLNA 480 ENVGQDTRIL TRKSFEPSGI VLSAATSLWL PVTQQRLFEF LCDGKCRNQW DILSNGASME 540 ITLLVPKGQQ EGSCVSLLRA AGKDQNESSM LILQETWNDA SGALVVYAPV DFPSMNVVMS 600 GGDSGYVALL PSGFSILPDG SSLSDQIDTN GNQESKGCLL TVGFQILVNS LPTAKLNVES 660 VETVNNLIAC TIHKIRAALR IPA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 60 | KKKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00559 | DAP | Transfer from AT5G52170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028346m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025603 | 1e-160 | AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19. | |||
GenBank | CP002688 | 1e-160 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282099.1 | 0.0 | homeobox-leucine zipper protein HDG7 | ||||
Swissprot | Q9LTK3 | 0.0 | HDG7_ARATH; Homeobox-leucine zipper protein HDG7 | ||||
TrEMBL | R0F0C9 | 0.0 | R0F0C9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282099.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 0.0 | homeodomain GLABROUS 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028346m |
Entrez Gene | 17875141 |
Publications ? help Back to Top | |||
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