PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028346m
Common NameCARUB_v10028346mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 684aa    MW: 76101.2 Da    PI: 5.915
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028346mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-1861116156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r k +++t++q++eLe++F+ +++p++++r eL kkl L+ +q+k+WFqNrR+++k
  Carubv10028346m  61 RTKYHRHTSYQIQELESFFKVCPHPNEKQRLELGKKLTLESKQIKFWFQNRRTQMK 116
                      3455678999*******************************************999 PP

2START149.13.9e-472274312206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                      la ea++e++k+ +++ p+W + s    ++e++   e         +r+sg+v  +++ lve l+d++ +W e+++     a+t+evis+g   
  Carubv10028346m 227 LAMEAMEEFLKLEELDNPLWNSKS----EKESMNHNE-----YRSSSRESGLVLINSVALVEALMDTN-KWAEMFEcivaVASTVEVISNGsdg 310
                      5789****************9999....444444442.....22347*********************.************************* PP

                      ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
            START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         g lqlm+ae+q++splvp +   f+Ry++q+g+g w++vdvS d +++ ++ +s+  ++++pSg++i++ +ng skvtw+eh +++++++ 
  Carubv10028346m 311 srnGSLQLMQAEFQVMSPLVPiKQEKFLRYCKQHGDGLWAVVDVSYDINREDENLKSYGGSKKFPSGCIIQDIGNGCSKVTWIEHLEYEESHIN 404
                      ***************************************************999***************************************9 PP

                      HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 179 wllrslvksglaegaktwvatlqrqcek 206
                      +++ +l++s++a ga +w+atlqrqce+
  Carubv10028346m 405 SVY-QLLGSSVALGATKWLATLQRQCES 431
                      998.689999****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1945118IPR009057Homeodomain-like
SuperFamilySSF466891.46E-1847118IPR009057Homeodomain-like
SMARTSM003895.7E-1557122IPR001356Homeobox domain
PROSITE profilePS5007116.8658118IPR001356Homeobox domain
PfamPF000463.2E-1661116IPR001356Homeobox domain
CDDcd000861.93E-1561118No hitNo description
PROSITE profilePS5084839.501217434IPR002913START domain
CDDcd088752.93E-100222430No hitNo description
SuperFamilySSF559611.51E-27223432No hitNo description
SMARTSM002343.1E-34226431IPR002913START domain
PfamPF018521.4E-40227431IPR002913START domain
SuperFamilySSF559615.36E-18449670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MNGHLDVDMS RGDFNPSFFH GRLKDDEFES RSLSDDDSFD AMSGDESKQE EQRPKKKKKK  60
RTKYHRHTSY QIQELESFFK VCPHPNEKQR LELGKKLTLE SKQIKFWFQN RRTQMKTQLE  120
RHENVILRQE NEKLRVENGF LKESMRGSLC IDCGGAVIPG EVSFEQHQLR IENAKLKDEL  180
DRICALANRF IGGSISLEQP SNGGIGSQHL PIGNGFSGGT SQMFMDLAME AMEEFLKLEE  240
LDNPLWNSKS EKESMNHNEY RSSSRESGLV LINSVALVEA LMDTNKWAEM FECIVAVAST  300
VEVISNGSDG SRNGSLQLMQ AEFQVMSPLV PIKQEKFLRY CKQHGDGLWA VVDVSYDINR  360
EDENLKSYGG SKKFPSGCII QDIGNGCSKV TWIEHLEYEE SHINSVYQLL GSSVALGATK  420
WLATLQRQCE SFTSLLSSQD HTGLSLAGTK SILKLAQRMK LNFYSGITAS SVHKWEKLNA  480
ENVGQDTRIL TRKSFEPSGI VLSAATSLWL PVTQQRLFEF LCDGKCRNQW DILSNGASME  540
ITLLVPKGQQ EGSCVSLLRA AGKDQNESSM LILQETWNDA SGALVVYAPV DFPSMNVVMS  600
GGDSGYVALL PSGFSILPDG SSLSDQIDTN GNQESKGCLL TVGFQILVNS LPTAKLNVES  660
VETVNNLIAC TIHKIRAALR IPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028346m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256031e-160AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19.
GenBankCP0026881e-160CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282099.10.0homeobox-leucine zipper protein HDG7
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLR0F0C90.0R0F0C9_9BRAS; Uncharacterized protein
STRINGXP_006282099.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]