PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028272m | ||||||||
Common Name | CARUB_v10028272mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 27679 Da PI: 4.7457 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.4 | 6.8e-56 | 60 | 164 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf Carubv10028272m 60 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 153 89*****998899********************************************************************************* PP NF-YC 92 lvdivprdelk 102 lvdivpr+e+k Carubv10028272m 154 LVDIVPREEIK 164 *******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.72E-34 | 48 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-20 | 82 | 145 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.4E-37 | 83 | 160 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDNNNNNNNN QPPPPTSVYP PNSAVTTVIP PPPPGSTSII AGGGGGGATY HHLLQQQQQQ 60 LQMFWTYQRQ EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL 120 TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EEIKEEEDAA AAAAALGGGG 180 MVPQAASGVP YYYPPMGQPA VPGGMMIGRP AMDPSGVYAQ PPSQAWQSVW QNSAGGGGDD 240 VSYGSGGSSG HGNLDSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-55 | 68 | 160 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028272m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007649 | 0.0 | AB007649.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLE2. | |||
GenBank | AK317038 | 0.0 | AK317038.1 Arabidopsis thaliana AT5G63470 mRNA, complete cds, clone: RAFL19-94-G17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282031.1 | 0.0 | nuclear transcription factor Y subunit C-4 isoform X2 | ||||
Refseq | XP_023635978.1 | 0.0 | nuclear transcription factor Y subunit C-4 isoform X1 | ||||
Swissprot | Q9FMV5 | 1e-144 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | R0GDZ3 | 0.0 | R0GDZ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282031.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-114 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028272m |
Entrez Gene | 17875688 |