PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028227m
Common NameCARUB_v10028227mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 137aa    MW: 14560.7 Da    PI: 6.8083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028227mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-211565255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  Carubv10028227m 15 KYRGVRRRP-WGKYAAEIRDSRNHG--ERIWLGTFDTAEEAARAYDQAAYSMRG 65
                     8********.**********65543..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-351579IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241575IPR016177DNA-binding domain
PROSITE profilePS5103223.8151573IPR001471AP2/ERF domain
CDDcd000181.73E-271574No hitNo description
Gene3DG3DSA:3.30.730.102.7E-321575IPR001471AP2/ERF domain
PfamPF008471.7E-151565IPR001471AP2/ERF domain
PRINTSPR003675.3E-121627IPR001471AP2/ERF domain
PRINTSPR003675.3E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDQGGRGGGG AEHGKYRGVR RRPWGKYAAE IRDSRNHGER IWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMAS GGGGGSSSSV VAGSSSSSAS ASSSSRQVFE FEYLDDSVLE  120
DLLEQGENST NKGKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-5811361131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028227m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282000.11e-94ethylene-responsive transcription factor ERF096
SwissprotQ9LSX03e-58ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLR0GUN63e-93R0GUN6_9BRAS; Uncharacterized protein
STRINGXP_006282000.15e-94(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.16e-37Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]