PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10028191m | ||||||||
Common Name | CARUB_v10028191mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | CO-like | ||||||||
Protein Properties | Length: 379aa MW: 41527.1 Da PI: 5.6702 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Carubv10028191m 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 23.1 | 1.6e-07 | 46 | 91 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 +C++++ ++++ C d ++ lC++C +H g H++++ Carubv10028191m 46 LICERCNAQPASVRCSDERVSLCQNCDWVGHDGanstttshHKRQT 91 68*****************************778888888777665 PP | |||||||
3 | CCT | 59.5 | 1.2e-20 | 321 | 364 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ Carubv10028191m 321 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 364 99***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.98E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 8.2E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.286 | 43 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-5 | 47 | 92 | No hit | No description |
SMART | SM00336 | 4.6 | 48 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.1 | 321 | 363 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-15 | 321 | 363 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 SDERVSLCQN CDWVGHDGAN STTTSHHKRQ TINCYSGCPS SSELSSIWSF CLDLNMSSAG 120 ESACEQGMGL MTIDEVPGDK SCVQNVNVDK PGTSSAAQGM DRSSVPENTS LAKEVGVCED 180 DFNGNLNMEE VDMALENYEE LFGAAFNSSR YLFEHGGIGS LFDKDEPPEG SIQGNSMQQP 240 AMSNNASADD SFMTCRTEPI ICYSSKPAHS NISFSGVTGE SNAGDFQDCG ASAMKQLSNE 300 PQAWCPPTSQ EIIASSHATT RNNAVMRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF 360 VKSGEAYDYD PMSPARSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10028191m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY039957 | 0.0 | AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds. | |||
GenBank | AY142607 | 0.0 | AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281967.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10 | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | R0GR91 | 0.0 | R0GR91_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281967.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Carubv10028191m |
Entrez Gene | 17875570 |
Publications ? help Back to Top | |||
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