PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028191m
Common NameCARUB_v10028191mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 379aa    MW: 41527.1 Da    PI: 5.6702
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028191mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C+ ++e++   +C+++  +lC +C  + H+       H++
  Carubv10028191m  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                     6*****************************65677777776 PP

2zf-B_box23.11.6e-074691441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41
                      +C++++ ++++  C d ++ lC++C   +H g        H++++
  Carubv10028191m 46 LICERCNAQPASVRCSDERVSLCQNCDWVGHDGanstttshHKRQT 91
                     68*****************************778888888777665 PP

3CCT59.51.2e-20321364144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Carubv10028191m 321 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 364
                      99***************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.98E-7447No hitNo description
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.2864392IPR000315B-box-type zinc finger
CDDcd000211.06E-54792No hitNo description
SMARTSM003364.64891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.1321363IPR010402CCT domain
PfamPF062032.5E-15321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWVGHDGAN STTTSHHKRQ TINCYSGCPS SSELSSIWSF CLDLNMSSAG  120
ESACEQGMGL MTIDEVPGDK SCVQNVNVDK PGTSSAAQGM DRSSVPENTS LAKEVGVCED  180
DFNGNLNMEE VDMALENYEE LFGAAFNSSR YLFEHGGIGS LFDKDEPPEG SIQGNSMQQP  240
AMSNNASADD SFMTCRTEPI ICYSSKPAHS NISFSGVTGE SNAGDFQDCG ASAMKQLSNE  300
PQAWCPPTSQ EIIASSHATT RNNAVMRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF  360
VKSGEAYDYD PMSPARSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028191m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399570.0AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426070.0AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281967.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLR0GR910.0R0GR91_9BRAS; Uncharacterized protein
STRINGXP_006281967.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]