 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10028176m |
| Common Name | CARUB_v10028176mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
GRAS |
| Protein Properties |
Length: 436aa MW: 48625.6 Da PI: 5.1722 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10028176m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 307.4 | 3.2e-94 | 32 | 425 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPi 90
++lLl+cA+a++s+d +laq++++ l++lasp+gd++qRl++ f++AL +r a++++ ++ l++ + +++ + +++++ +l f++++P+
Carubv10028176m 32 EQLLLHCANAIESNDVTLAQQIIWVLNNLASPEGDSTQRLVSSFLRALISRAASKSPA-FACLSVAAPAPSVsrkTLHRFSVIELaeFVDLTPW 124
79***************************************************95554.3344444444444111555555555599******* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfe 177
++f++++aN aIl+av+g + vHi+D+++++++Q p+L++a+a++ + pp l++T+++s +++ ++ee+g++L +fA++ ++ +e
Carubv10028176m 125 HRFGFIAANAAILDAVKGYSSVHIVDLSLTHCMQVPTLIDAMANKLhkQLPPLLKLTVIVSDDESyppplLGVSYEELGSKLVNFATTRNIAME 218
*******************************************998656699*********8888999888999******************** PP
GRAS 178 fnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
f+++ +++ l++l +e+Lr +p +Eal+Vn++++lh+++d+++++ s +r+ +Lk +++l+P++v++++++ad +s+s+ r+ + +y
Carubv10028176m 219 FRIIsssYSDGLSSL-VEQLRNDPfvfNEALVVNCHMMLHYIPDQTLTSISnpPRTVFLKELRDLNPTIVTLIDEDADFTSTSLISRLRSLYNY 311
***966555566666.9*****************************99888899**************************************** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.... 352
++ +d+ ++ l se+r+++E+ ++++i nv+a+egaer+er e +++W er++ea F v l+e +a++ak++l++++ ++g++ +
Carubv10028176m 312 MWIPYDTADVFLTCGSEQRQWYEAD-VSWKIDNVIAKEGAERVERLELKSRWFERMREAKFAGVGLGEAVATEAKTMLEEHAtGWGMKRDvded 404
*************************.9*******************************************************999987664433 PP
GRAS 353 eesgslvlgWkdrpLvsvSaW 373
++ + lvl+Wk++++v++SaW
Carubv10028176m 405 DDVERLVLTWKGHSVVFASAW 425
3467899************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MNTTRILNPT TRPLWPGFSS SKSLCGDANC MEQLLLHCAN AIESNDVTLA QQIIWVLNNL 60
ASPEGDSTQR LVSSFLRALI SRAASKSPAF ACLSVAAPAP SVSRKTLHRF SVIELAEFVD 120
LTPWHRFGFI AANAAILDAV KGYSSVHIVD LSLTHCMQVP TLIDAMANKL HKQLPPLLKL 180
TVIVSDDESY PPPLLGVSYE ELGSKLVNFA TTRNIAMEFR IISSSYSDGL SSLVEQLRND 240
PFVFNEALVV NCHMMLHYIP DQTLTSISNP PRTVFLKELR DLNPTIVTLI DEDADFTSTS 300
LISRLRSLYN YMWIPYDTAD VFLTCGSEQR QWYEADVSWK IDNVIAKEGA ERVERLELKS 360
RWFERMREAK FAGVGLGEAV ATEAKTMLEE HATGWGMKRD VDEDDDVERL VLTWKGHSVV 420
FASAWAPINR VTDLI*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
