PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10028086m
Common NameCARUB_v10028086mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 662aa    MW: 71866.5 Da    PI: 5.5834
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10028086mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.15.4e-2090140455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l+W   LH++F+eave L G+ kA Pk+i ++m v+gL+++++ SHLQkYR 
  Carubv10028086m  90 LKWKDGLHSKFLEAVEFL-GERKALPKAIQRFMRVDGLSRKQISSHLQKYRR 140
                      79****************.9*******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015574.6E-1990140IPR006447Myb domain, plants
SuperFamilySSF466892.69E-1290144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-1890145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVTSSNNTTY DDSNQDVMVT SSNNTADDDS NQDVTVTSAN NTADAGSNED VTVTSSNNTA  60
DDGSNQDETV TSTNNAAGGS PAGPRRPVML KWKDGLHSKF LEAVEFLGER KALPKAIQRF  120
MRVDGLSRKQ ISSHLQKYRR QMRKLKKKAA KAELAKENRN DISASSTSCD PLDSYKTKQL  180
NMENLFKSQV GYDQSSILLY KNTSNSYMLH GRPVYDLSLT RSNLLPMGGS CGFSTGLLPL  240
NQEGRSVLAT PQDLARVVKL GKYGTPNGSL GMYSNQGTGH MQSNYSGIFV DAHGNLFGHG  300
GAGRVGGNNA YGSLGESFSA MNLNFNNNNI SNHGASPSIN PSTFASSLAN DGQTESYLLA  360
QMYGRVPRSS NFGTSQASQV PLFGQYGTTN DVYDVARINA NGYGDLTGLG GGRFYGGNVN  420
DFLGENVGTM NMNFSNTNMT SHGSSSSSLS SPFSPLSFNM GPVQRNYNAQ PDGLIPTLES  480
LSVCNDHHDN GNQVYSQFDQ NMGEGQARAG NVELSNYVLE SWKFDNHQGQ VGAENTELSN  540
ENFLNEHNNW IFNNQHQGQV SNAELFNNVL LEGNGINNWS FNNHQSQVNV GLANDVLSQR  600
NAISSNWNFG YEQAMNEQAL NSLAANSEMY MNSLAANSEM YTPSLERMSA INQVTTKNTF  660
IK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10028086m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633441.10.0GATA zinc finger domain-containing protein 14
TrEMBLR0F0J20.0R0F0J2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006281888.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62110.12e-38G2-like family protein