PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10027999m | ||||||||
Common Name | CARUB_v10027999mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 21145.3 Da PI: 5.4489 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g Carubv10027999m 20 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.787 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-38 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 21 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.80E-27 | 21 | 79 | No hit | No description |
Pfam | PF00847 | 6.2E-12 | 21 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MDGDAVTDVA VGGTRKRERP YKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY 60 DTAVFYLRGP TARLNFPELL PLDKFSDEDM SAATIRKKAT EVGAQVDALG TAVQNNRHRV 120 FGQSIDSDDD KKNFHRDYHN GDQEDDEEED DDKRFKTAGR FLDRVDLNKL PDPESSDEEW 180 KSKY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 21 | 77 | 6 | 63 | ATERF1 |
3gcc_A | 1e-14 | 21 | 77 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10027999m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279808.1 | 1e-133 | ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9FH94 | 1e-109 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | R0EV51 | 1e-132 | R0EV51_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279808.1 | 1e-133 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 1e-111 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10027999m |
Entrez Gene | 17875042 |
Publications ? help Back to Top | |||
---|---|---|---|
|