PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027896m
Common NameCARUB_v10027896mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 850aa    MW: 96420.7 Da    PI: 6.1269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027896mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046152175123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ Cg+ ++++ +Lk+H +  H
  Carubv10027896m 152 YICGVCGRKCKTNLELKKHFKQlH 175
                      89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.9E-472142IPR029060PIN domain-like
PROSITE profilePS5015710.554152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061672.87E-11164306No hitNo description
Gene3DG3DSA:3.40.50.10102.9E-4237301IPR029060PIN domain-like
SuperFamilySSF483711.27E-93391815IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.105.9E-98406815IPR011989Armadillo-like helical
SMARTSM001850.84435475IPR000225Armadillo
CDDcd000201.89E-24441554No hitNo description
SMARTSM001850.013476514IPR000225Armadillo
PfamPF005142.9E-9478513IPR000225Armadillo
PROSITE profilePS5017611.427485527IPR000225Armadillo
SMARTSM001850.0027516554IPR000225Armadillo
PfamPF005145.3E-5518554IPR000225Armadillo
SMARTSM001850.78556595IPR000225Armadillo
PROSITE profilePS501768.522566608IPR000225Armadillo
SMARTSM001850.078597637IPR000225Armadillo
CDDcd000203.37E-21604721No hitNo description
SMARTSM001852.2E-7639680IPR000225Armadillo
PfamPF005143.5E-9639680IPR000225Armadillo
PROSITE profilePS501768.907650685IPR000225Armadillo
SMARTSM001851.0E-6682722IPR000225Armadillo
PfamPF005141.1E-8683721IPR000225Armadillo
CDDcd000201.90E-17687815No hitNo description
SMARTSM001850.042725765IPR000225Armadillo
PfamPF161861.7E-15777823IPR032413Atypical Arm repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPFLSHK SHFFTFSDSK FQNPKFPSFP LRRLRPITSC LKSASSSEID  60
LVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PFEAATALRK VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRERRNLDFM ERKGEVTPIE PYICGVCGRK CKTNLELKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDRDRALGRH  300
ADLWVPWIGV EKGEIGEKDL IPGKRPQFEE EESEVGFGGD ELFSLSYDED ERAEMTVESD  360
GFGRFNVSAF SEDEWVEDEG DFALSEIRAI IECLNGLENI LKEEEEVSKA IIDGVWSDDP  420
SLQFESTAKI RRDITRPSES VIRSEVLHRL VQFLCKEEFP KLQYEVAWIL TNLATEKPEE  480
VVGHGAVPIL IHLLASPKDY VREQAIWALN NLAGHSTRYR DIVLHCGVLM PLLRLLYNDT  540
TLRIATWTLC NLCRGRPSPA FEQVKPALPA LELLLQSNDE EVLKHACLTL CNMSNGSEDG  600
IQSLIEAGFV RKLIQFLQHP SPAILVLAVR TIGAIAAGNN QHTQCVINCG ALPILSNLLT  660
GNYEKNIKRH ACWVISNITA GTEEQIQTVI DANFIPTLVY LAQNTEFELK KEAVWAISNV  720
ALSGSHDQIK YMVEQSCIKP LCDILVCEDM KTILKCLNGL ENILKTGEAA KKTEDKNCYA  780
LLIEGAEGLE KIENLQSDDN IVICEKALKI LETYWLVEED ENMNHIVLEA KTLYDMEPKT  840
CSFGGQLKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2yns_A1e-15541084440481IMPORTIN SUBUNIT ALPHA-1A
2yns_B1e-15541084440481IMPORTIN SUBUNIT ALPHA-1A
4b8j_A1e-15541084478519IMPORTIN SUBUNIT ALPHA-1A
4b8o_A1e-15541084440481IMPORTIN SUBUNIT ALPHA-1A
4b8p_A1e-15541084440481IMPORTIN SUBUNIT ALPHA-1A
4b8p_B1e-15541084440481IMPORTIN SUBUNIT ALPHA-1A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027896m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854060.0AY085406.1 Arabidopsis thaliana clone 150246 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640865.10.0importin subunit alpha-8
RefseqXP_023640867.10.0importin subunit alpha-8
TrEMBLR0GTZ40.0R0GTZ4_9BRAS; Uncharacterized protein
STRINGXP_006281740.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein