PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027894m
Common NameCARUB_v10027894mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 176aa    MW: 19185.6 Da    PI: 9.0948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027894mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19106156155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ykGVr+++ +g+W+AeI+dp     +  +r +lg+f tae+Aa+a+++a+ +l g
  Carubv10027894m 106 KKYKGVRQKP-SGKWAAEIWDP-----SmkARRWLGTFPTAEMAARAYDEAAAELVG 156
                      59******99.7*********9.....445**********************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-19106142No hitNo description
SuperFamilySSF541717.19E-17107158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-24107158IPR001471AP2/ERF domain
PfamPF008472.3E-12107156IPR001471AP2/ERF domain
PROSITE profilePS5103221.114107168IPR001471AP2/ERF domain
SMARTSM003803.0E-30107171IPR001471AP2/ERF domain
PRINTSPR003674.8E-8108119IPR001471AP2/ERF domain
PRINTSPR003674.8E-8130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MNSFMFDPTK TDCSENALSN NQHENFAQVA PPPPSSSCLT RDQEHEIMVT ALRQVISNSG  60
GHTSSSNLIA VEALPPPDAG PCPICGVTGC YGCTFQRPHG KMEKEKKYKG VRQKPSGKWA  120
AEIWDPSMKA RRWLGTFPTA EMAARAYDEA AAELVGRASA RRGTTNGEGF KRRRR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027894m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281738.11e-130ethylene-responsive transcription factor ERF122
SwissprotQ38Q402e-83EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0F0661e-129R0F066_9BRAS; Uncharacterized protein
STRINGXP_006281738.11e-130(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.13e-76ERF family protein