PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027835m
Common NameCARUB_v10027835mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 201aa    MW: 22588.2 Da    PI: 6.5504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027835mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-17105155255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Carubv10027835m 105 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 155
                      7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30104164IPR001471AP2/ERF domain
PfamPF008478.1E-12105155IPR001471AP2/ERF domain
SMARTSM003809.6E-35105169IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22105164IPR016177DNA-binding domain
CDDcd000183.63E-19105163No hitNo description
PROSITE profilePS5103224.605105163IPR001471AP2/ERF domain
PRINTSPR003673.5E-13106117IPR001471AP2/ERF domain
PRINTSPR003673.5E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904277Biological Processnegative regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MATFEESSDM DVIQKHLFDD LMIPDDFIQD FVFDDTAFVS GLWSLEPFNP VPKLEPSSPV  60
LDLDSYVQEF LQVEAESSSS STTTSPQVAT VSNRKKTKRF EETRHYRGVR RRPWGKFAAE  120
IRDPAKKGSR IWLGTFESDI DAARAYDYAA FKLRGRKAVL NFPLDAGKYD APVNSCRKRR  180
RSDVPQPQGT TTSTSSSSSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28102164264ATERF1
3gcc_A1e-28102164264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180RKRRR
2176181RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027835m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122390.0AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankAY0459680.0AY045968.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankAY0793210.0AY079321.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281687.21e-145ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-114EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLR0GQG21e-145R0GQG2_9BRAS; Uncharacterized protein
STRINGXP_006281687.11e-146(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-113ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Suh MC,Go YS
    DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(8): p. e29463
    [PMID:25763625]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  5. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  6. Ju S,Go YS,Choi HJ,Park JM,Suh MC
    DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa.
    Front Plant Sci, 2017. 8: p. 1210
    [PMID:28744297]
  7. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]