PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027643m | ||||||||
Common Name | CARUB_v10027643mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HSF | ||||||||
Protein Properties | Length: 107aa MW: 12140.6 Da PI: 7.5145 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 52.3 | 1.6e-16 | 1 | 75 | 9 | 91 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 +++d+++++++sws ng+sf+v++e+ef ++vLp++ +++a F+R L gFkk++++++ we+ ++F +g+ Carubv10027643m 1 MVDDPSTDSVVSWSGNGKSFIVWNESEFCRDVLPRFSHYKEMAPFIRRLGNMGFKKIESSDQ--------WEYGSDNFLRGHP 75 89*********************************9999*******************9994........9999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.0E-14 | 1 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.5E-16 | 1 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.35E-19 | 1 | 76 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-21 | 1 | 76 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MVDDPSTDSV VSWSGNGKSF IVWNESEFCR DVLPRFSHYK EMAPFIRRLG NMGFKKIESS 60 DQWEYGSDNF LRGHPEPNLP PDAVRARLKE LALASKKGQA DPSFYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027643m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453361.1 | 1e-24 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_023879311.1 | 6e-24 | heat stress transcription factor A-4a-like | ||||
TrEMBL | R0GQ12 | 2e-73 | R0GQ12_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281542.1 | 4e-74 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 3e-21 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027643m |
Entrez Gene | 17875644 |