PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027543m
Common NameCARUB_v10027543mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 204aa    MW: 22091.8 Da    PI: 9.4682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027543mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-0580102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k Fs+   L  H  +H
  Carubv10027543m  80 YKCGVCDKKFSSYQALGGHKASH 102
                      9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-879146No hitNo description
PfamPF139124.5E-1179103IPR007087Zinc finger, C2H2
SMARTSM003550.02280102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.84780107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM003550.88124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016124146IPR007087Zinc finger, C2H2
PfamPF139125.5E-12124148IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MALEALNSPR IVEDTSRIFH GVEQWTTKGK KRSKRFSRSG HHLQDHGLTE EEYLAFCLML  60
LARDRGDLDS VTAAKKQGYY KCGVCDKKFS SYQALGGHKA SHRNLNGGGD NEKAVAVSPA  120
VKSHVCSICL KSFATGQALG GHKRCHYEGN GNGGVSNSEG VGSTSHVSSN SHRGFDLNIT  180
PVREFSPDDE VMSPMATKKP RLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027543m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281460.11e-151zinc finger protein AZF3
SwissprotQ9SSW03e-94AZF3_ARATH; Zinc finger protein AZF3
TrEMBLR0GT271e-150R0GT27_9BRAS; Uncharacterized protein
STRINGXP_006281460.11e-150(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.13e-82zinc-finger protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]