PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027266m | ||||||||
Common Name | CARUB_v10027266mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 18342.9 Da PI: 6.6773 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.5 | 2.1e-17 | 64 | 152 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp +f+++h gk+ + +tl +e+g ++e + r+++ l++GW +F+ a++L gD++vF+l++ + f +v Carubv10027266m 64 FVKSMLQSHVSGGFWLGLPVHFCRSHLGKHDG--VITLINEEGDEYETVYLARRTG----LSGGWMGFAVAHNLAYGDTLVFELISPTAF--KV 149 89************************666544..7***************555555....************************997777..66 PP EEE CS B3 95 kvf 97 + Carubv10027266m 150 YIT 152 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-24 | 58 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 58 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.38E-25 | 62 | 153 | No hit | No description |
Pfam | PF02362 | 1.4E-14 | 64 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-25 | 64 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 64 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MNLRVFCLVL VLQVDVERVQ IRRRGVSKRR DLSNRVYVSE EVRDDAIARA EKFQADLGSD 60 YPSFVKSMLQ SHVSGGFWLG LPVHFCRSHL GKHDGVITLI NEEGDEYETV YLARRTGLSG 120 GWMGFAVAHN LAYGDTLVFE LISPTAFKVY ITRVESSGES SEI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027266m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023644176.1 | 1e-108 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-88 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | R0GJY3 | 1e-116 | R0GJY3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279707.1 | 1e-117 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-90 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027266m |
Entrez Gene | 17875924 |
Publications ? help Back to Top | |||
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