PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027246m
Common NameCARUB_v10027246mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 172aa    MW: 19200 Da    PI: 10.7067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027246mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-201564255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a+++++g
  Carubv10027246m 15 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAAREFRG 64
                     69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-391578IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-221573IPR016177DNA-binding domain
CDDcd000188.04E-301572No hitNo description
PROSITE profilePS5103223.7231572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-331572IPR001471AP2/ERF domain
PfamPF008473.1E-141564IPR001471AP2/ERF domain
PRINTSPR003672.2E-111627IPR001471AP2/ERF domain
PRINTSPR003672.2E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAPKQVVNAV RKEVHFRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE AARAYDKAAR  60
EFRGSKAKTN FPLPGESGAV TVTTTAREMT RQRFPFACHR ERKVVGGYAA AGFCFDPSRA  120
AALREELSRV YPVRFDPVNI ELSIGIREAV VKVEARRELN LDLNLAPPVD V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-231278269ATERF1
3gcc_A3e-231278269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027246m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281207.11e-122ethylene-responsive transcription factor 9
SwissprotQ9FE672e-98ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLR0GP271e-120R0GP27_9BRAS; Uncharacterized protein
STRINGXP_006281207.11e-121(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-89erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]