PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027237m | ||||||||
Common Name | CARUB_v10027237mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 20053.3 Da PI: 6.5148 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Carubv10027237m 2 TPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.772 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 4.52E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKAQEK KRPMSPTSSS 60 SNCCSSSMTT TTTHDTGGSN GKMNQEFEDG YYSMDDIWRE IDQSGANIIK PVKDMYYSEQ 120 SCYLNFPPPA SPTWESSLES IWNMDADESK MSSFAIDQFP LSFEHGRSSW SSLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027237m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229048 | 0.0 | AK229048.1 Arabidopsis thaliana mRNA for MYB27 protein - like, complete cds, clone: RAFL16-34-F17. | |||
GenBank | AY519641 | 0.0 | AY519641.1 Arabidopsis thaliana MYB transcription factor (At5g59780) mRNA, complete cds. | |||
GenBank | DQ075252 | 0.0 | DQ075252.1 Arabidopsis thaliana MYB transcription factor MYB59-1 (At5g59780) mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075253 | 0.0 | DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633463.1 | 1e-128 | transcription factor MYB59 isoform X1 | ||||
Refseq | XP_023633464.1 | 1e-128 | transcription factor MYB59 isoform X2 | ||||
Swissprot | Q4JL84 | 1e-104 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | R0EXV8 | 1e-128 | R0EXV8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281199.1 | 1e-128 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 1e-101 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027237m |
Entrez Gene | 17876042 |
Publications ? help Back to Top | |||
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