PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027186m | ||||||||
Common Name | CARUB_v10027186mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21334 Da PI: 8.8157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 1e-15 | 128 | 176 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +++kGVr ++ +g+W AeI+dps r r +lg+f tae+Aa+a+++a+ l Carubv10027186m 128 KKHKGVRKKP-SGKWSAEIWDPSL---RVRRWLGTFSTAEMAAQAYEEAAAGL 176 589****999.7*********954...4999******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.044 | 129 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-22 | 129 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-8 | 129 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-14 | 129 | 180 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-19 | 129 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 130 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-13 | 132 | 161 | No hit | No description |
PRINTS | PR00367 | 1.2E-6 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
QLVRPLCIQN LTPTSVSFAE VFAVEMNYLQ FDHTKNEYSE NIPSDDQTES LTHPRPSSSS 60 YLTRDQEHGI MVTALRQVIS NSGSDTSSNC IAGETLLSPD AGPCPLCGVT GCYGCAFRQG 120 REEIKKEKKH KGVRKKPSGK WSAEIWDPSL RVRRWLGTFS TAEMAAQAYE EAAAGLVGRR 180 LARRGERRSR KP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | ERRSRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027186m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560881 | 4e-41 | AY560881.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g20350) mRNA, complete cds. | |||
GenBank | BT024698 | 4e-41 | BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281152.2 | 1e-123 | ethylene-responsive transcription factor ERF120 | ||||
Swissprot | Q38Q40 | 2e-63 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | R0GNY4 | 1e-141 | R0GNY4_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006281152.1 | 1e-142 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67000.1 | 3e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027186m |
Entrez Gene | 17874677 |