PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027155m | ||||||||
Common Name | CARUB_v10027155mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22988.7 Da PI: 8.7761 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Carubv10027155m 104 FSCNYCQRKFYSSQALGGHQNAH 126 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 101 | 131 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSFEQTYAPL HLKYNAPQAQ TLQTNISHLS NFYFLSLSLS RFLFLSLSKH RVMDFQPNTS 60 LRLSLPSYKN HQLNLELVLE PSSMSSSSSS STNSSSCLEQ PRVFSCNYCQ RKFYSSQALG 120 GHQNAHKLER TLAKKSRELF RSSTTVDSDQ PYPFSGRFEL YGRGYEGFVE SGGSRDFSAR 180 RVPESGLDQD QEMSHLDLSL RL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027155m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011482 | 0.0 | AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2. | |||
GenBank | ATHZFPB | 0.0 | L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281125.1 | 1e-145 | zinc finger protein 2 | ||||
Swissprot | Q39261 | 3e-92 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | R0GS96 | 1e-143 | R0GS96_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281125.1 | 1e-144 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6621 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-92 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027155m |
Entrez Gene | 17876630 |