PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027063m
Common Name34G24.12b, CARUB_v10027063mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 229aa    MW: 25696.8 Da    PI: 9.5392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027063mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-1973123255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ g   r++lg+f+ta eAa+ +++a+ kl+g
  Carubv10027063m  73 HYRGVRRRP-WGKYAAEIRDPKKKG--VRVWLGTFDTAMEAARSYDKAAFKLRG 123
                      7********.**********96643..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-3272132IPR001471AP2/ERF domain
PROSITE profilePS5103224.43473131IPR001471AP2/ERF domain
SMARTSM003804.7E-3873137IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2273132IPR016177DNA-binding domain
PfamPF008471.9E-1273123IPR001471AP2/ERF domain
CDDcd000189.29E-3173131No hitNo description
PRINTSPR003672.8E-107485IPR001471AP2/ERF domain
PRINTSPR003672.8E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSSSHQQQQ KEQDQSTLDL ITQHLLTDFY SFETFVSNIH HSTTSTLSQR KPPLATIAVP  60
TIAPVAQEDD QRHYRGVRRR PWGKYAAEIR DPKKKGVRVW LGTFDTAMEA ARSYDKAAFK  120
LRGSKAILNF PLEAGKHADL GDNNNNNNNK TLSLKEKRKR QVPEDESYLR SHKTVKREEA  180
QAQVDACPLT PSSWMGFWDG ADSKDMGIFS VPPLPPSPSL GYSQLVLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2872132161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2872132464ATERF1
3gcc_A2e-2872132464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10027063m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0032480.0JX003248.1 Capsella rubella clone BAC 34G24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281047.11e-172ethylene-responsive transcription factor ERF105
SwissprotQ8VY901e-129EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLK4FZR11e-170K4FZR1_9BRAS; Uncharacterized protein
STRINGXP_006281047.11e-171(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-123ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo YL,Todesco M,Hagmann J,Das S,Weigel D
    Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella.
    Genetics, 2012. 192(2): p. 729-39
    [PMID:22865739]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  4. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  5. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]