PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10027040m | ||||||||
Common Name | CARUB_v10027040mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27112.3 Da PI: 5.9855 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.7e-20 | 77 | 130 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ ++e++A++lgL+ rqV vWFqNrRa++k+ Carubv10027040m 77 KRKLTDEQVNMLEYSFGNEHKLESGRKEKIAAELGLDPRQVAVWFQNRRARWKN 130 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.5e-38 | 76 | 167 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sF +e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++Le++v +L+e+l+e Carubv10027040m 76 RKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAAELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDTVVLGQCQLESQVLKLTEQLHE 167 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.2E-18 | 74 | 135 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.36E-18 | 76 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.35E-16 | 76 | 132 | No hit | No description |
PROSITE profile | PS50071 | 16.147 | 76 | 131 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.5E-17 | 77 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 78 | 138 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MDHGRLMEDQ MVLGGSQVYH YTTPTQSSQC IMVNQIDGSS SSGEGSKPVK RRRKRRSKGT 60 SATNEGDVGE IGGMLRKRKL TDEQVNMLEY SFGNEHKLES GRKEKIAAEL GLDPRQVAVW 120 FQNRRARWKN KKLEEEYAKL KNHHDTVVLG QCQLESQVLK LTEQLHEAQN EIRKLSERLE 180 EMPTNSSSSS LSVEANDAQF DFELAPEPET NYNNIPFYML DNNYLQSMEY WDGLYV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 49 | 55 | KRRRKRR |
2 | 74 | 79 | LRKRKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00591 | DAP | Transfer from AT5G66700 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10027040m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281022.1 | 1e-178 | homeobox-leucine zipper protein ATHB-53 | ||||
Swissprot | Q9LVR0 | 1e-128 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | R0GNJ1 | 1e-176 | R0GNJ1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006281022.1 | 1e-177 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12602 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66700.1 | 1e-128 | homeobox 53 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10027040m |
Entrez Gene | 17876951 |
Publications ? help Back to Top | |||
---|---|---|---|
|