PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10027012m | ||||||||
Common Name | CARUB_v10027012mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27294.4 Da PI: 6.0884 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7.1e-20 | 89 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g Carubv10027012m 89 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 138 7********.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-33 | 88 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 89 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 89 | 147 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-37 | 89 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.51E-33 | 89 | 147 | No hit | No description |
Pfam | PF00847 | 4.1E-14 | 89 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MYGNWPSNES EDKEEIEENE NLFPVFSARS QHDMRVMVSA LTQVIGNQQS NSHDNMGSID 60 NHPSVYNPQD PIQQVAPTHQ DEGNLRRRHY RGVRQRPWGK WAAEIRDPQK AARVWLGTFE 120 TAESAALAYD EAALKFKGSK AKLNFPERVQ LGRNSTYYSS NQLPQIQPQN IPYSQYYQDG 180 SSNDMLSFNS GGGYGNSVSH DHSTTTAATT SSSSGGSSRQ QEEQDYARFW HFGDSSSSPR 240 SGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-27 | 88 | 149 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10027012m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254582 | 0.0 | AC254582.1 Capsella rubella clone JGIBSIA-41A2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279688.1 | 0.0 | ethylene-responsive transcription factor ERF114 | ||||
Swissprot | Q9FH54 | 1e-123 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | R0EUW4 | 0.0 | R0EUW4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279688.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5292 | 18 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-102 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10027012m |
Entrez Gene | 17875628 |
Publications ? help Back to Top | |||
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