PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026997m
Common NameCARUB_v10026997mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 249aa    MW: 26870.5 Da    PI: 7.6092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026997mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-0595117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ CgksFs+   L  H  +H
  Carubv10026997m  95 YKCSVCGKSFSSYQALGGHKTSH 117
                      9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.72E-1094117No hitNo description
Gene3DG3DSA:3.30.160.604.0E-595117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28195122IPR007087Zinc finger, C2H2
SMARTSM003550.002695117IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-1495119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576675.72E-10163190No hitNo description
SMARTSM003550.82168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349168190IPR007087Zinc finger, C2H2
PfamPF139126.0E-11168192IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALETLNSPT ATTTTTARPF IRYREEMEPE NLEQWAKRKR TKRQRFDHHQ NQETDTKLAS  60
EEEYLALCLL MLARGSAVQS LPQSSRPSPS DHRDYKCSVC GKSFSSYQAL GGHKTSHRKP  120
TNNNTTITSG KQELSHNGHS NSNAGSVVIN VTVNTSNVGV GQISGKIHTC SICFKSFSSG  180
QALGGHKRCH YDGGNNGNGS SSDSVEVVAT GSDISDVDNE RSSEEIAIGG HRGFDLNLPA  240
DQVSVTIS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026997m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279684.10.0zinc finger protein AZF1
SwissprotQ9SSW11e-125AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0EU430.0R0EU43_9BRAS; Uncharacterized protein
STRINGXP_006279684.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-107zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]