PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026931m
Common NameCARUB_v10026931mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 279aa    MW: 31333.1 Da    PI: 7.802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026931mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18124178256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Lee F+++++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  Carubv10026931m 124 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 178
                      788899***********************************************98 PP
2HD-ZIP_I/II120.49.1e-39124213191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +l
  Carubv10026931m 124 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-TL 213
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.3E-22292IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-18106181IPR009057Homeodomain-like
SuperFamilySSF466896.84E-19106181IPR009057Homeodomain-like
PROSITE profilePS5007117.313120180IPR001356Homeobox domain
SMARTSM003896.9E-16122184IPR001356Homeobox domain
CDDcd000864.39E-16124181No hitNo description
PfamPF000469.7E-16124178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
SMARTSM003401.1E-23180223IPR003106Leucine zipper, homeobox-associated
PfamPF021834.0E-8180213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFSQNH NPLQLNLTPP NSSLSINLQR FPWNQSFDPT SDLRKIDVNS  60
FPSTANCEEE TGVSSPNSTI SSTISGKRCE REDISGADHD DITPDRGYSR GTSDEDDDGG  120
ETSRKKLRLS KDQSAFLEET FKEHNTLNPK QKLALAKKLN LTARQVEVWF QNRRARTKLK  180
QTEVDCEYLK RCVEKLTEEN RRLQKEAMEL RTLKLSPQFY GQMTPPTTLI MCPSCERVAG  240
PSSSNHQHNH RPVSINPWVA CAGQVAHGLN FEALRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128SRKKLRL
2172180RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026931m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284500.0AF428450.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
GenBankAJ4311830.0AJ431183.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT2 (hat2 gene).
GenBankATU093350.0U09335.1 Arabidopsis thaliana clone HAT2 homeobox protein mRNA, partial cds.
GenBankAY0523240.0AY052324.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
GenBankAY0619040.0AY061904.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280934.10.0homeobox-leucine zipper protein HAT2
SwissprotP466010.0HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLR0EX700.0R0EX70_9BRAS; Uncharacterized protein
STRINGCagra.7985s0003.1.p0.0(Capsella grandiflora)
STRINGXP_006280934.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-160Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]