PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026895m
Common NameCARUB_v10026895mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 291aa    MW: 31539.1 Da    PI: 5.8637
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026895mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like924.9e-29137190155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv++v++L G++ A+Pkti++lm+v+gL++e+v+SHLQkYRl
  Carubv10026895m 137 RPRLVWTPQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLSRENVASHLQKYRL 190
                      59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.717132193IPR017930Myb domain
SuperFamilySSF466899.85E-19134194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-29136195IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-23138190IPR006447Myb domain, plants
PfamPF002498.4E-8140189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGKEVRMSDY GDDAGGEEQD RVPEWEIGLP DGDDLTPLSQ SLVPSILALA FSIIPERSRT  60
VHDVNRASQI TISSLRSSSA NGYSAEEVVD RVGSSSPGSD PKKQKKSDGG EAAVDSMAEE  120
EGDSGTEDHA SGKTLKRPRL VWTPQLHKRF VDVVAHLGIK SAVPKTIMQL MNVEGLSREN  180
VASHLQKYRL YLKRVQGLTT EEGPYSSDQL FSSTPVPPQS FQDGGGSNGK LGVTSMIQMP  240
VYGNHMGMQG QYHQLRNHGN ESNQYMMMQQ NRFGTMVNSP SVGGGNVNDK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-34137193157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026895m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280902.10.0transcription factor BOA
SwissprotQ9LTH41e-156PCLL_ARATH; Transcription factor BOA
TrEMBLR0GN750.0R0GN75_9BRAS; Uncharacterized protein
STRINGXP_006280902.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-149G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]