PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026848m
Common NameCARUB_v10026434mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SBP
Protein Properties Length: 305aa    MW: 33715.8 Da    PI: 9.1078
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026848mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.8e-41148223277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  Carubv10026848m 148 CQVEGCNIDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 223
                      **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33142209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38146226IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31148221IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEWEIDGFDC TSLYSSSFAA VAYGGGGSSG SDIAHAFSKS SKSTSLSSSS AEVRTYNFTS  60
EAGESLPGEL GSSEEFAKGI NTSPSLELSF GSGDPVLGLK LGKRTYFEDF WEVENSKGLA  120
LPVSLASSSV SPVKKSKPIP QKLQTPHCQV EGCNIDLSSA KDYHRKHRIC ENHSKFPKVV  180
VSGVERRFCQ QCSRFHCLSE FDEKKRSCRR RLSDHNARRR KPNPGRTYDG KPQVDFVWNR  240
FALIHPRSEE NFLWPSSKPV QSRGLIPQPT KTETSNKQFT EHCGFGLLDP KTKTSRAELF  300
SKGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271482211184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203220KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026848m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116250.0AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639532.10.0squamosa promoter-binding-like protein 2 isoform X2
SwissprotQ9S8401e-172SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLR0GQB50.0R0GQB5_9BRAS; Uncharacterized protein
STRINGXP_006280496.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-144squamosa promoter binding protein-like 2