PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026841m
Common NameCARUB_v10026841mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 306aa    MW: 34486.6 Da    PI: 6.581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026841mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.1e-30104160258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers ++p++ +itYeg H h
  Carubv10026841m 104 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDEPNTYIITYEGFHFH 160
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-2897160IPR003657WRKY domain
PROSITE profilePS5081126.79698160IPR003657WRKY domain
SuperFamilySSF1182909.81E-26101161IPR003657WRKY domain
SMARTSM007741.0E-35103162IPR003657WRKY domain
PfamPF031061.4E-24104160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIYGNDAVED LLVIDPPLFF LSQEQHHSLM PNEESITNKF FSSTLYSGPR IQDFANVLAD  60
VVEQQTQPGQ EISKPTLPLL ERTSLSKVDR YTLKVKNNSN GLSDDGYKWR KYGQKSIKNS  120
PNPRSYYKCT NPICNAKKQV ERSIDEPNTY IITYEGFHFH YNYPFVLPDT THWPNKKAKI  180
LKHDDPINKT SQTQEETKQA HLTEPANQNH PAHKAEENTP VNELFFPVDH CRGQQGLLED  240
VVAPAMKTTL ARHSVLASSW SSLSSSCTSS SCSSSPPLSP SSLCWSPNVD ITFSDEILEL  300
LRRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-191021601674Probable WRKY transcription factor 4
2lex_A3e-191021601674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026841m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280856.20.0probable WRKY transcription factor 49
SwissprotQ9FHR71e-134WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLR0GAW70.0R0GAW7_9BRAS; Uncharacterized protein
STRINGXP_006280856.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-136WRKY DNA-binding protein 49