PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026840m
Common NameCARUB_v10026840mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 306aa    MW: 32608.6 Da    PI: 7.0459
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026840mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.11.9e-3847107262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Carubv10026840m  47 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 107
                      57899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3538105IPR003851Zinc finger, Dof-type
PfamPF027015.7E-3349105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53451105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQDIHHEYSM AGGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN  60
TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC RKAKRSKTKQ PSSSADKLST  120
TTLEHNVEEK SSTGSHSSSE SSSLTASNST TVAAVSVTAA AEVASSVVPG FDMSNLKLYG  180
NGIEWSTLLG QGSSDGGVFS EIGGFTAAST IETTPFGFGG KFVNQDDHLK LESETVQQQQ  240
FGDRTAQVEF QGRSSDPNMG FEPLDWGSGG GDQTLFDLTS TVDHAYWSQS QWTSSDQDQN  300
GLYLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11825GGRFFGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026840m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154720.0AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBankAY0564130.0AY056413.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBankAY0817090.0AY081709.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBankAY0858560.0AY085856.1 Arabidopsis thaliana clone 19080 mRNA, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280855.10.0dof zinc finger protein DOF5.4
SwissprotQ8LDR01e-164DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBLR0GRD10.0R0GRD1_9BRAS; Uncharacterized protein
STRINGXP_006280855.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-143OBF binding protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu P,Chen H,Ying L,Cai W
    AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 27705
    [PMID:27297966]
  3. Ramirez-Parra E, et al.
    The transcription factor OBP4 controls root growth and promotes callus formation.
    New Phytol., 2017. 213(4): p. 1787-1801
    [PMID:27859363]
  4. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]