PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026808m
Common NameCARUB_v10026808mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 316aa    MW: 35138 Da    PI: 4.5142
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026808mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1872125356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe ++++  e++ +LA++l L+ rqV +WFqNrRa++k
  Carubv10026808m  72 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWK 125
                      56689************************************************9 PP

2HD-ZIP_I/II127.46.2e-4171163193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls eqvk+LE++Fe ++kLeperKv+la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L  ++ke
  Carubv10026808m  71 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELALQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163
                      69*************************************************************************************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1958129IPR009057Homeodomain-like
PROSITE profilePS5007117.47567127IPR001356Homeobox domain
SMARTSM003891.1E-1670131IPR001356Homeobox domain
PfamPF000462.2E-1572125IPR001356Homeobox domain
CDDcd000861.72E-1672128No hitNo description
Gene3DG3DSA:1.10.10.605.2E-1974134IPR009057Homeodomain-like
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PfamPF021836.9E-17127168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKRSRGSSDS LPAFLPIRLS TTDKQISPRP TNTGFLYSGA GDYSQMFDAL DDDGSLDDMG  60
GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPERKV KLAQELALQP RQVAIWFQNR  120
RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELRAKLNV DGVNGVEENG  180
VVKAAEANET VMANNNEVLE LNQRPPPPPP HIPTEAPTSE LAYEMFSIFP RTESFREEDP  240
ADSSDSSAVL NEEYSPTTVE AAGAVAATAV EMSTTMGCFS QFVKMEEHED LFSGEEACKL  300
FADNEQWFCS DQWNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00587DAPTransfer from AT5G65310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026808m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250540.0AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds.
GenBankAY0742930.0AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds.
GenBankAY0913400.0AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds.
GenBankX670330.0X67033.1 A.thaliana mRNA Athb-5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280832.10.0homeobox-leucine zipper protein ATHB-5
SwissprotP466670.0ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLR0GN080.0R0GN08_9BRAS; Uncharacterized protein
STRINGXP_006280832.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129861526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.11e-162homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]