PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026794m
Common NameCARUB_v10026794mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 319aa    MW: 35022.9 Da    PI: 9.0269
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026794mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19e-393897261
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Carubv10026794m 38 DQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 97
                     57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-352596IPR003851Zinc finger, Dof-type
PfamPF027019.5E-334096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4324296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSSHTNLPSP KPVPKPDHRI SAGTSQTKKQ PSSSVAQDQQ TLKCPRCNSP NTKFCYYNNY  60
SLSQPRHFCK SCRRYWTRGG ALRNVPIGGG CRKTKKSIKP SSSMNALPSS SSSSQRFFSS  120
IMDDSSKFFP PPTTMDFQLA GLSLNKINDL QLLNNQEVLD LRPMISSGRE NTPVDVGSGL  180
SLMGFGDYNN NHSPTAFTTA GANDGNLASS IETLSCLNQD LHWRLQQQRM AMLFGNSKEE  240
TVVVERPQPI LYRNLEIVNS SSPSSPTKKG DNQTEWYFGN NSDNEGVISN NGNTGGGSEW  300
NNNGIQAWTD LNHYNALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026794m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266390.0AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640922.10.0dof zinc finger protein DOF5.7
SwissprotQ9LSL60.0DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLR0GMZ50.0R0GMZ5_9BRAS; Uncharacterized protein
STRINGXP_006280817.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.10.0Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]