PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026720m
Common NameCARUB_v10026720mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 344aa    MW: 38470.6 Da    PI: 9.6391
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026720mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind405.28.5e-12413431301
        GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                      mdd g+re  r+k+       ++ +s+     +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++
  Carubv10026720m   1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYR 89 
                      999999887888873331222222344.....5************************************************************* PP

        GAGA_bind  88 ensla.......salpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                      ens++       sa+p+g+q+++g+k++++ +++++       pql+++a+e re+e ++ lp++ +a ++ e++k+k+++r k+pk+++++++
  Carubv10026720m  90 ENSMVtaasanmSACPPGCQISRGVKNMHHPHMHHHhhqqhhiPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAA 183
                      ***9999999999*****************999666689999**************************************************** PP

        GAGA_bind 168 kkksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                      +k+++k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCt
  Carubv10026720m 184 NKRGTKNQRKVKKESEDDLtkimflktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCT 277
                      ***************984358********************************88*************************************** PP

        GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                      tt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Carubv10026720m 278 TTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 343
                      ****************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1811343IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-1021343IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM  60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAASAN MSACPPGCQI SRGVKNMHHP  120
HMHHHHHQQH HIPQLTENAY EPREMEPNDG LPTSPTAGSV LESAKPKRGK RVKDPKTTTQ  180
TAANKRGTKN QRKVKKESED DLTKIMFLKT THDYTEEDSS KHILIGSKSD WKSQEMVGLN  240
QVVYDETTMP PPVCSCTGVL RQCYKWGNGG WQSSCCTTTL SMYPLPALPN KRHARVGGRK  300
MSGSAFNKLL SRLAAEGHHD LSNPVDLKDH WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026720m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280751.10.0protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_023643574.10.0protein BASIC PENTACYSTEINE6 isoform X1
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GAL80.0R0GAL8_9BRAS; Uncharacterized protein
STRINGXP_006280751.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6