PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026713m
Common NameCARUB_v10026713mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 345aa    MW: 37586 Da    PI: 8.7511
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026713mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.7e-39133191462
           zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       al+cprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+
  Carubv10026713m 133 LALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 191
                      5789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31128188IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.45135189IPR003851Zinc finger, Dof-type
PfamPF027011.8E-33135189IPR003851Zinc finger, Dof-type
PROSITE patternPS013610137173IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRSRSQLTTT IVCVSISSHT FPCIYKYICL AFPFASLLLI SKNSLSLSLS DLNKQSPIHI  60
NTPSHSLQSA FSDSPLMDHL LQHQDVFGNY NKAREAMGVS SYPSNPTQLD QDQKKRSHQA  120
TEAAATRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV  180
GGGCRKNKRS TSSATRSLRT TPEPASYDEK AFSAASFGGY STNEQNDLSL AFALLNKQPP  240
GSSAQLGFPS EFSSSHQSDM ESSVFGTSQQ KGNASYAFGN GSSGLDIGMG TDPSKVLWGF  300
PWQLSGESFG MMNIGAGGGG HVDQIDSGRE IWTNMNYINS GALM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:30626969}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026713m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:30626969}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280744.20.0dof zinc finger protein DOF5.3
SwissprotQ84TE91e-154DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBLR0EWQ20.0R0EWQ2_9BRAS; Uncharacterized protein
STRINGXP_006280744.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61321845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-146TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]