PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026656m
Common NameCARUB_v10026656mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 360aa    MW: 40107.8 Da    PI: 6.8342
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026656mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.71.8e-2962167366
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                               
  Carubv10026656m  62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgfgespssttfpg 155
                      78*************************************************************6666665555555555555544444433333 PP

              TCP  66 ...........s 66 
                                 +
  Carubv10026656m 156 tnlgflenwdlG 167
                      333333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-2763133IPR005333Transcription factor, TCP
PROSITE profilePS5136929.78963121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRSRECEEEE IQAKQEGDNS QNHQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT  60
FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEAAKDDVDK  120
LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTFPGTNLGF LENWDLGGSS RTRSRITDTA  180
TTQRESFDLD KGKWIKHDEN SNQDHQGFDT THQHFPLSNP YNNTSSYYNL GHLQQSLDQS  240
GNNVTVAISN VAANNNNNLN LPPPSSSAGD GSQLFFGPTP PAMSSLFPTY PSFLGASHQH  300
HHHQVVDGAG HLQLFSSNSN TATQQQMMTG NTSLIRPFHH LMSSNHDTDR HSSDNDSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1968122155Putative transcription factor PCF6
5zkt_B3e-1968122155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026656m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0082690.0AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3.
GenBankBT0294890.0BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280693.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI80.0R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_006280693.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.10.0TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]