PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026653m
Common NameCARUB_v10026653mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 362aa    MW: 39465.2 Da    PI: 6.1773
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026653mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.3e-081957339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                     +r C+ +++  +  fC+ ++ +lC +C + +H+   H++
  Carubv10026653m 19 ARSCDACKSVTAAVFCRVDSAFLCITCDTRIHSFtrHER 57
                     578******99*********************6577876 PP
2zf-B_box28.14.3e-0958103342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Carubv10026653m  58 VWVCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
                      689*****************************66999999999986 PP
3CCT706.2e-24293336144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Carubv10026653m 293 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 336
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111760IPR000315B-box-type zinc finger
SMARTSM003363.8E-71760IPR000315B-box-type zinc finger
PfamPF006431.9E-62058IPR000315B-box-type zinc finger
CDDcd000212.63E-82060No hitNo description
PROSITE profilePS5011910.72256103IPR000315B-box-type zinc finger
PfamPF006434.5E-757103IPR000315B-box-type zinc finger
CDDcd000211.69E-859103No hitNo description
SMARTSM003364.6E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.817293335IPR010402CCT domain
PfamPF062035.6E-18293335IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCITCDTRIH SFTRHERVWV  60
CEVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA ETAVAKISAS  120
STFGILGSSA TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKS SDFMFSDFDR  180
LIDFEFPNSL SHHHQPSGGD SLVPVQTKTE PLPLTNNDHC FDIDFCRSKL SAFTYSTQSL  240
SHSVSTSSLE YGVVPDGNTN NCVPEIPIPF NRSGITSSTA ATTGGDQTNS MDREARVLRY  300
REKRKNRKFE KTIRYASRKA YAESRPRIKG RFAKRTETEN DDVFLSHVYA SAAQYGVVPT  360
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026653m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0884320.0AY088432.1 Arabidopsis thaliana clone 6639 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280689.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLR0EWL40.0R0EWL4_9BRAS; Uncharacterized protein
STRINGCagra.2848s0048.1.p0.0(Capsella grandiflora)
STRINGXP_006280689.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]