PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026597m
Common NameCARUB_v10026597mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 379aa    MW: 42581.4 Da    PI: 8.5542
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026597mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.7e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Carubv10026597m  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-12549No hitNo description
CDDcd002021.72E-18663No hitNo description
PfamPF003204.5E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.1E-8236331IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RPEGDEIEIE  60
DRKPQRVMIK GMSLNKKIPK RKSYQENFTV KRANLEFSTG FKRKALDEEA SNRSSSGSVV  120
SNSESCAQSN AWETTFPCKR RTGVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGSTEEDL  180
LFENEPPMLL GHGSVLMRDP HSGTREEESE ASSLVVESSK SSSVHSAKFG GKAIKQEQLK  240
RSKPQVLGRQ SLLLCSIDLK DVFNFDEFIE KFTEDEQKKL MKLLPQVDSF DRPDSLRSMF  300
ESSQFKENLS LFQQLVADGV FETSSSGSKH DDVKTLAKLA LTDPNKSHLL ESYKMLKVFQ  360
HILFLKHTDY ILLVFVHF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026597m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266420.0AK226642.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-38-K02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634821.10.0GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLR0GAC10.0R0GAC1_9BRAS; Uncharacterized protein
STRINGXP_006280636.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27