PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026528m | ||||||||
Common Name | CARUB_v10026528mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 401aa MW: 43212.3 Da PI: 6.7009 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.2 | 4.3e-29 | 158 | 212 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kp+++WtpeLH++Fv+aveqL G +kA+P++ile+m+vk+Lt+++v+SHLQkYR++ Carubv10026528m 158 KPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSH 212 79*******************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.18 | 155 | 214 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 156 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.54E-20 | 156 | 215 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 158 | 212 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-8 | 161 | 210 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MLTVSPAPLI GNNSTNSKDT FMAADFADFT TGDLPDFTTV GDFSDELLDG IDYYDDLFIG 60 FDGDDVLPDL DMDSEILAEY SGSGRDEEQE MEGNTSTASE TSEREGGGGG GGLCKQERGG 120 GGDGGGDGGF RDKTVRRGKR KGKKSKNCSS DDNDIKKKPK VDWTPELHRK FVQAVEQLGV 180 DKAVPSRILE IMNVKSLTRH NVASHLQKYR SHRKHLLARE AEAASWNLRR HATVAVAGVG 240 GGGKKPWTAP ALGYPPHVAP MHHGHFRPLH VWGHPTWPNK HKPNTPVSAH RTYPIPAVAA 300 APSTAWPAHP PYWHQQPLYP QGYGMATSNH STIGVPATRP LGPTNPPIDI HPSNESIDAA 360 IGDVITKPWL PLPLGLKPPS VDGVMTELQR QGVSDVPPLP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-19 | 156 | 210 | 3 | 57 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRGKRKGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026528m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB062490 | 0.0 | AB062490.1 Arabidopsis thaliana mRNA for GPRI2, complete cds. | |||
GenBank | AY026773 | 0.0 | AY026773.1 Arabidopsis thaliana golden2-like transcription factor (GLK2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279640.1 | 0.0 | transcription activator GLK2 | ||||
Swissprot | Q9FFH0 | 0.0 | GLK2_ARATH; Transcription activator GLK2 | ||||
TrEMBL | R0GN10 | 0.0 | R0GN10_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279640.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 0.0 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026528m |
Entrez Gene | 17877309 |