PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026434m
Common NameCARUB_v10026434mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SBP
Protein Properties Length: 434aa    MW: 48135.5 Da    PI: 8.5447
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026434mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40180255277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  Carubv10026434m 180 CQVEGCNIDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 255
                      **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-33174241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-38178258IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MECNAKPSMQ WEWENLISFG GSSGELPRKL KQMEWEIDGF DCTSLYSSSF AAVAYGGGGS  60
SGSDIAHAFS KSSKSTSLSS SSAEVRTYNF TSEAGESLPG ELGSSEEFAK GINTSPSLEL  120
SFGSGDPVLG LKLGKRTYFE DFWEVENSKG LALPVSLASS SVSPVKKSKP IPQKLQTPHC  180
QVEGCNIDLS SAKDYHRKHR ICENHSKFPK VVVSGVERRF CQQCSRFHCL SEFDEKKRSC  240
RRRLSDHNAR RRKPNPGRTY DGKPQVDFVW NRFALIHPRS EENFLWPSSK PVQSRGLIPQ  300
PTKTETSNKQ FTEHCGFGLL DPKTKTSRAE LFSKEKVTIS SHMGASQDLD GALSLLSNST  360
SWPVSSDQPR RFSLDHHPSS NLQPPAHRSA TQLNSVSSYW QPNPPAVDGT TTQHRNGVGQ  420
FNENYFSLNE FYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026434m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116250.0AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639524.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_023639529.10.0squamosa promoter-binding-like protein 2 isoform X1
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLR0G9X70.0R0G9X7_9BRAS; Uncharacterized protein
STRINGXP_006280496.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2