PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026331m
Common NameCARUB_v10026331mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 475aa    MW: 52693.6 Da    PI: 9.3827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026331mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12298343555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e ++sLq
  Carubv10026331m 298 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTVAREQLSSLQ 343
                      8899********************97.....8**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-14291358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.761293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-10295343No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13297361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9298343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MHLILSCSYL IAMDGYYNEA SEEPSSSSSG GLARSLFLEY RQSVIPLQNG HVPSMAIMNN  60
LPYVEIPQQE IQRLAYNDAQ RLFYQMKIEA SLREWFPEDF NRNSSPVNSV DHLRPPPHPS  120
SSSSSLSPNN ISEYSSLLFP LIPKPSTTTD AVNVPVHPLL APTNMIHHQL QQQEPLFRNR  180
QREEEAMTQA ILAVLTGPGP GPGPSSPPST SSSPLRKGRA TAFKRYHCTI SGGGRGPPQS  240
SVLKQGMMKR AVSFYSRLNI HRRERLAREN ATTGGDGSSG SGGGGRYTSG PSATQLHHMI  300
SERKRREKLN ESFQALRSLL PPGTKKDKAS VLTVAREQLS SLQGGISKLL ERNRELEAKL  360
AGEKEIENDL QPDERFNVRI RHVPESTSRE RILDLRVVLR GDIIRVEDLM IRLLEFLKQI  420
NNVSLASIEA QTQARADGDS SIVLVSLRLK IIEGEWDESA FQEAVRRVVA DLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306ERKRRE
2302307RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026331m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240351e-136AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026881e-136CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633474.10.0putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLR0GQ200.0R0GQ20_9BRAS; Uncharacterized protein
STRINGXP_006280405.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]