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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10026281m |
| Common Name | CARUB_v10026281mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
C2H2 |
| Protein Properties |
Length: 497aa MW: 54756 Da PI: 8.263 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10026281m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.6 | 4.5e-05 | 90 | 110 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Carubv10026281m 90 CEICGKGFQRDQNLQLHRRGH 110
*******************88 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 497 aa
Download sequence Send
to blast |
YIQKPTFNFS LNKSRIQEEE DMTTGEVLQT TISSTGSGFA QSSSTLDHDE SLINPPLVKK 60
KRNLPGNPDP EAEVIALSPK TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT 120
SKEVRKRVYV CPEKTCVHHH SSRALGDLTG IKKHFCRKHG EKKWKCDKCA KRYAVQSDCK 180
AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA KINAASHLNG LTAAAGAAGS 240
VNLNYQYLMG TLIPPLQPFV PLPQTNQNHH HQQHYQPPPA SSSSLSLWMG QDIAPPQPQP 300
QDYDWVYGNP KAASDQCIDN NNNNRDELIA QTANASSATT TTTLSVPSLF SNDQTQNTNA 360
NANMSATALL QKAAEIGVTS TTTAATNDPS TFLQTFPLKS SDQTATYDDG EKFFALFGSN 420
NNNIGLMSRH THDQEIENAR NDVTVASALD ELQNYPWKRR RVDGGGEGGG GGQTRDFLGV 480
GVQTLRHHPS SINGWI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
