PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026035m
Common NameCARUB_v10026035mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 666aa    MW: 71832.1 Da    PI: 5.0454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026035mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.2e-1102796652374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +++++e+A+a+++g++e a+++La +s++ + ++++ ++l+ +++ AL++r+++     +++lp s+++e   +e+l +++l++e+sP++k+++
  Carubv10026035m 279 RQTVMEIATAIAEGKTEIASEILASVSQTPNLRRNSEEKLVDFMVTALRHRINN----PAESLP-SPATELYGKEHLLSTQLLYELSPCFKLGF 367
                      6889**************************************************....333343.344445699******************** PP

             GRAS  96 ltaNqaIleavege..erv...HiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesg......skeeleetgerLakfAeel 172
                      ++aN aIl+a+ ++    v   H+iDfdi++G+Q++ Ll+aL++R++g      +p ++iT+v +++ g       +e+l+++g+ L+++ ++l
  Carubv10026035m 368 MAANLAILDAAGNNdeG-VinlHVIDFDIGEGGQYVHLLHALSTRRNGnsqntkTPVVKITAVTNNSDGfvvgdgGEERLKAVGDLLSQLGDRL 460
                      ***********999642.2355*********************999555566669**********88889****99****************** PP

             GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                      g++++fnv+++ rl dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y a
  Carubv10026035m 461 GISVSFNVVASLRLGDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLNPRVVTIVEQEMNSNTAPFLGRVSESCACYGA 554
                      ********8888********************************************************************************** PP

             GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd...gyrveeesg 356
                      l++s+e+++p+ + +r kvE+  +gr+ivn+vaceg +r+er+e ++kWr+r+++aGF+ ++ sek+a+++k+ l++ + ++   g++v+e++g
  Carubv10026035m 555 LLESVESTVPSSNTDRGKVEEG-IGRKIVNAVACEGMDRIERCEVFGKWRMRMSMAGFELMASSEKIAESMKSRLSNNNgKRvhsGFTVKEDNG 647
                      **********************.****************************************************99875433338******** PP

             GRAS 357 slvlgWkdrpLvsvSaWr 374
                       +++gW++r+L ++SaWr
  Carubv10026035m 648 GVCFGWMGRTLAVASAWR 665
                      *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.77252641IPR005202Transcription factor GRAS
PfamPF035142.5E-107279665IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MSSGFPGGGG GGPEFFNGGG GRSVIPGGPG TVINVGNNNN IQPTYRNQVP GMFLDQIGNR  60
VAAGHGFAGK RTLADFQAAQ QHQHQQYQQQ QQQQPFYNQA ALNAFLLRSV KPRNYQNHLQ  120
SPSPVIDLTS LNDISFSQRY GLPVLRSQTT TQQSDLGLFG GIRMGYGSGD NTNNNLTLTG  180
VPCIEPVQQN RVHESENMLN SLRELEKQLL DDDDDESDAQ GGGDDDVSVI TNSNSDWIQN  240
LVTPDPNPNP NPVMTSSPSS SSSSSSPSTA STTTSVCSRQ TVMEIATAIA EGKTEIASEI  300
LASVSQTPNL RRNSEEKLVD FMVTALRHRI NNPAESLPSP ATELYGKEHL LSTQLLYELS  360
PCFKLGFMAA NLAILDAAGN NDEGVINLHV IDFDIGEGGQ YVHLLHALST RRNGNSQNTK  420
TPVVKITAVT NNSDGFVVGD GGEERLKAVG DLLSQLGDRL GISVSFNVVA SLRLGDLSRE  480
SLGCDPDEPL AVNLAFKLYR VPDESVCTEN PRDELLRRVK GLNPRVVTIV EQEMNSNTAP  540
FLGRVSESCA CYGALLESVE STVPSSNTDR GKVEEGIGRK IVNAVACEGM DRIERCEVFG  600
KWRMRMSMAG FELMASSEKI AESMKSRLSN NNGKRVHSGF TVKEDNGGVC FGWMGRTLAV  660
ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3325166565473Protein SHORT-ROOT
5b3h_B7e-3425166511419Protein SHORT-ROOT
5b3h_E7e-3425166511419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10026035m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280138.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGXP_006280138.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8