PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025996m
Common NameCARUB_v10025996mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 696aa    MW: 78125.4 Da    PI: 6.365
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025996mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822161.55.4e-50912291134
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                      gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+    ++++  ++s+es+l
  Carubv10025996m  91 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSIESPL 180
                      6899************************************************************************....89999999999999 PP

           DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasa........a 134
                      + s+lk++a+a+   +++++++ ++ +sp+slds+ +a++        +
  Carubv10025996m 181 SsSTLKNCAKAALECQQHSVLRIDENLSPVSLDSVVIAESdhpgngryT 229
                      9899********************************9987555555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-4892240IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.57E-158259692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-166262692IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.9E-81268656IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52298312IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52319337IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52341362IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52434456IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52507526IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52541557IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52558569IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52576599IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.9E-52614636IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
KHQRSEQLHD TKMHTLNNTT TGSQDPNLDP IPPDPDQFPN RSHNHHPQTR RPRGFAAAAA  60
AASIVPTESD VNNGNIAGIG GGEGSSGGGG GGKGKREREK EKERTKLRER HRRAITSRML  120
AGLRQYGNFP LPARADMNDV IAALAREAGW SVDADGTTYR QSHQPNHVVQ YPTRSIESPL  180
SSSTLKNCAK AALECQQHSV LRIDENLSPV SLDSVVIAES DHPGNGRYTG ASPIPSVGCL  240
EANQLLQDVH STEPRNDFTE SFYVPVYAML PVGIIDSFGQ LVDPEGVRQE LSYMKSLNVD  300
GVVIDCWWGI VEGWNPQKYV WSGYRELFNR IRDFKLKLQV VMAFHEYGGN ASGNVIISLP  360
QWVLEIGKDN PDIFFTDREG RRSFECLNWS IDKERVLHGR TGIEVYFDFM RSFRSEFDDL  420
FVEGLIAGVE VGLGASGELK YPSFPERMGW IYPGIGEFQC YDRYSQSNLQ KEAKSRGFAF  480
WGKGPENAGQ YNSQPHETGF FQERGEYDSY YGRFFLNWYS QLLIGHAENV LSLASLAFEE  540
TKIIVKIPAI YWSYKTASHA AELTAGYYNP SNRDGYSLLF ETLKKYSVTV KFVCPGPQMS  600
SNEHEEALAD PEGLSWQVIN AAWDKKLLIG GENAITCFDR EVCMRLVDIA KPRNHPDSNH  660
FSFFTYRQPS PLIQGSTCFP DLNYFIKHMH GEIQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqs_A1e-11626369312447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025996m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279583.20.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLR0EUN60.0R0EUN6_9BRAS; Beta-amylase (Fragment)
STRINGXP_006279583.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]