PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025657m
Common NameCARUB_v10025657mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 732aa    MW: 81965.8 Da    PI: 6.7895
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025657mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.17.3e-1143577261374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d ++a +lL++++ ++++ gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s
  Carubv10025657m 357 LRSLLIHCAQAVAADDRRCAGQLLQQIRLHSTQFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLS 447
                      689***************************************************************9999...999****************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++++N++I + v+++ rvH+iDf+i +G+QWp+L++ +++   g+p++RiTg++ p++g   ++++eetg+rLa +A+++gvpfe+++ +ak++
  Carubv10025657m 448 YFITNKTIRDLVDKSPRVHVIDFGILYGFQWPTLIHRFSK--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPFEYKA-IAKKW 538
                      ***************************************9..8***************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +p e+e
  Carubv10025657m 539 DAIQLEDLDIDRDEVTIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPGEDE 632
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r+ +E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++++++k+a   +++++ + + +++++++l++gWk+r+++++S+W+
  Carubv10025657m 633 GRMLLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDSSIMKTALQKVHTFYHKDFVIDQDNKWLLQGWKGRTVMALSVWK 726
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.985331706IPR005202Transcription factor GRAS
PfamPF035142.5E-111357726IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MITEPGLTGI SGAINRNRLP GLPDQSTSLL PNHTFTPVTL YDGFNFNLSS DRRNTVLAAP  60
PENSVFIREM EEEEDPANDF DFSDAVLGYI SQMLNEEDMD DKVCMLQESL DLEAAERSLY  120
EAIGKKYPPS PERNLASSFA GENLDRVVPG NYTGGDCIGF GDGGNKPLSG GFTLDFRNPQ  180
SGRSSLLSVP QSNGLVTTST IYGDGIDESS KNTLYSDSNR ESHQSVWLFR RGIEETSRFF  240
PQQNELIVNF KEESCMSRGR KNSSRDETCV EEERSSKLPA VFGEDILRSD VVDKILVHVP  300
GEESMKEFDA LREVLKNGVE KKKASVAQGG KRRPRGRGRG RGRGGGGQNG KKEVVDLRSL  360
LIHCAQAVAA DDRRCAGQLL QQIRLHSTQF GDGNQRLAHC FANGLEARLA GTGSQIYKGI  420
VSKPRSAAAV LKAHQLFLAC CPFRKLSYFI TNKTIRDLVD KSPRVHVIDF GILYGFQWPT  480
LIHRFSKYGS PKVRITGIEF PQPGFRPAQR VEETGQRLAA YAKHFGVPFE YKAIAKKWDA  540
IQLEDLDIDR DEVTIVNCLY RAENLHDESV KVESCRDTVL NLIGKINPDL FVFGIVNGAY  600
NAPFFVTRFR EALFHFSSIF DMLETIVPGE DEGRMLLEME VFGREALNVI ACEGWERVER  660
PETYKQWHVR AMRSGLVQVP FDSSIMKTAL QKVHTFYHKD FVIDQDNKWL LQGWKGRTVM  720
ALSVWKPVSK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4136372925382Protein SCARECROW
5b3h_A2e-4136372924381Protein SCARECROW
5b3h_D2e-4136372924381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332342RPRGRGRGRGR
2334343RGRGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025657m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296472.10.0scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLR0HVC00.0R0HVC0_9BRAS; Uncharacterized protein
STRINGXP_006296472.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein