PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025511m
Common NameCARUB_v10025511mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 215aa    MW: 23824 Da    PI: 6.366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025511mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.6e-2170119356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g+
  Carubv10025511m  70 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDRAAFEFRGH 119
                      9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1669119IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2469128IPR016177DNA-binding domain
SMARTSM003803.3E-3869132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-3469128IPR001471AP2/ERF domain
PROSITE profilePS5103224.92269126IPR001471AP2/ERF domain
CDDcd000181.03E-3569128No hitNo description
PRINTSPR003673.0E-127081IPR001471AP2/ERF domain
PRINTSPR003673.0E-1292108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGNREDK DEELSRCSTL SESDVSAFVS ELTDQPIPPS SDQSSSLTLQ  60
EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD TAEEAALAYD RAAFEFRGHK  120
AKLNFPESIR VNSTQFYPST ATSHDSIIGT PPPAIAPDIL LDQYGQFQSG NSDYGATLST  180
MSSSSSSSLD DRGHRQNLED DENVKNTSIH KRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2665135170ATERF1
3gcc_A3e-2665135170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025511m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364561e-173AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
GenBankBT0002361e-173BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296339.11e-158ethylene-responsive transcription factor ERF112
SwissprotP930071e-102EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLR0G1F81e-157R0G1F8_9BRAS; Uncharacterized protein
STRINGXP_006296339.11e-157(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-78ERF family protein