PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025498m
Common NameCARUB_v10025498mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 337aa    MW: 38259.5 Da    PI: 10.6072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025498mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.6e-16891396
                     EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     k l     + s  l++p  f+ ++ gg  +e++   l++  s  +W+vk+  ++++    lt+GWkeF+ a++L+ gD++vFkl+++++f  +v++
  Carubv10025498m  8 KPL--LPGFHS-FLTIPVAFFLKNiGGR-NEQMAAELRSdVSKITWKVKI--DGQR----LTSGWKEFALAHDLRIGDILVFKLERDMSF--HVTM 91
                     555..444544.59******99997444.56688888886899*******..9888....*************************99999..7765 PP
2B3733.6e-23131214588
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       ++ ++l+ + l lp +f++++g++k+++ +++l +e+grsW+v l+ + + +++++++GW++F++angL++g f++Fkl++r +
  Carubv10025498m 131 KVTTSNLRFDSLNLPLSFVRANGLDKRCG-EIILINEKGRSWTVDLKQKTSCEATYIKRGWRSFCQANGLRAGSFFTFKLIQRgR 214
                      44566666677***************998.****************88888888**************************98633 PP
3B354.52.1e-172693363198
                      .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  k+++l d++g +W+ k++++ k++r+ l++GWkeF++ang+k g++v+++l+++ +++ v+k+++
  Carubv10025498m 269 NLAKKMSLLDKHGVKWSTKMSFEVKRQRMRLKGGWKEFCNANGVKIGESVILELVWEADRSSVLKFCS 336
                      35679***************************************************988888999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-18399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.069395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-20397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-15592No hitNo description
SMARTSM010192.2E-21695IPR003340B3 DNA binding domain
PfamPF023623.7E-111589IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-22122213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19125214IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.467127225IPR003340B3 DNA binding domain
CDDcd100171.37E-20127216No hitNo description
SMARTSM010197.3E-24128222IPR003340B3 DNA binding domain
PfamPF023621.1E-20129214IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-15251334IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-11255337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-13269336IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-13269335No hitNo description
PfamPF023627.8E-16269337IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392272337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSFLTI PVAFFLKNIG GRNEQMAAEL RSDVSKITWK VKIDGQRLTS  60
GWKEFALAHD LRIGDILVFK LERDMSFHVT MLGPSCCQYV PSLHNQNNLG KIQSKKKEAT  120
SSVDLSCFVA KVTTSNLRFD SLNLPLSFVR ANGLDKRCGE IILINEKGRS WTVDLKQKTS  180
CEATYIKRGW RSFCQANGLR AGSFFTFKLI QRGRSLGLLR LSPREIKEED GLSEANVVKS  240
TLIWKPSLSP SQNRFVTVTL TPYNLRESNL AKKMSLLDKH GVKWSTKMSF EVKRQRMRLK  300
GGWKEFCNAN GVKIGESVIL ELVWEADRSS VLKFCSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297KRQRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025498m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639569.10.0B3 domain-containing protein REM14, partial
SwissprotQ8GYM41e-107REM14_ARATH; B3 domain-containing protein REM14
TrEMBLR0HUY20.0R0HUY2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006296327.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-104B3 family protein