PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025479m | ||||||||
Common Name | CARUB_v10025479mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | DBB | ||||||||
Protein Properties | Length: 244aa MW: 27019.3 Da PI: 4.8052 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.8 | 9.5e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC++C +e H H+ Carubv10025479m 4 QCDVCEKAPATLICCADEAALCANCDVEVHAAnklaskHQ 43 7*****************************6556666665 PP | |||||||
2 | zf-B_box | 24.9 | 4.2e-08 | 55 | 86 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC ++H Carubv10025479m 55 PPCDICLEKAAFIFCVEDRALLCRDCDGATHA 86 68****************************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.428 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.79E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.5E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.93 | 52 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.35E-5 | 55 | 98 | No hit | No description |
Pfam | PF00643 | 7.2E-6 | 55 | 95 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKIQCDVCEK APATLICCAD EAALCANCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LEKAAFIFCV EDRALLCRDC DGATHAPNTR SANHQRFLAT GIRVALSSTS CSQEVEKNHF 120 DPANQQNAKQ VLSKPQPPQS PAPSPLWASD EFFRYSDDLD CSNKQKEQLD LGELDWLAEM 180 GFLGDQPDQE ALPAAEVPEL SFSHLAHAHS YNRSMKSNVS NKKPRLEIRY DDDEEHFLVP 240 DLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025479m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF323666 | 0.0 | AF323666.1 Arabidopsis thaliana B-box zinc finger protein STH mRNA, complete cds. | |||
GenBank | AF325077 | 0.0 | AF325077.1 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g31380) mRNA, complete cds. | |||
GenBank | AF370311 | 0.0 | AF370311.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds. | |||
GenBank | AY063097 | 0.0 | AY063097.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296307.1 | 1e-180 | B-box zinc finger protein 25 isoform X1 | ||||
Swissprot | Q9SID1 | 1e-156 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | R0HUW2 | 1e-179 | R0HUW2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296307.1 | 1e-179 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2711 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-154 | salt tolerance homologue |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025479m |
Entrez Gene | 17889976 |
Publications ? help Back to Top | |||
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