PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10025340m

Common Name

CARUB_v10025340mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NF-YC

Protein Properties

Length: 181aa MW: 20182.1 Da PI: 4.8096

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10025340m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	138.6	1.7e-43	14	112	1	99
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 qlks+w k++e + dfkn e+Pla+ik+i+k+d++v+m+++e+P l+ska +fi++lt+r+w h++e +r t+ ksdiaaav+rt++ dfl+d Carubv10025340m 14 QLKSYWLKEMEGDLDFKNYEFPLAKIKRIIKSDPNVTMLASEVPLLFSKAIKMFIMDLTMRAWRHTQEGNRITIYKSDIAAAVARTFTMDFLLD 107 89******************************************************************************************** PP NF-YC 95 ivprd 99 +v + Carubv10025340m 108 VVNAE 112 *9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.44E-22	17	110	IPR009072	Histone-fold
Pfam	PF00808	1.7E-16	33	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.3E-25	34	110	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MERNNIQPPQ NNLQLKSYWL KEMEGDLDFK NYEFPLAKIK RIIKSDPNVT MLASEVPLLF 60 SKAIKMFIMD LTMRAWRHTQ EGNRITIYKS DIAAAVARTF TMDFLLDVVN AEEPVAAISN 120 YVAMPYHNND VLPPGMVIGT PVVDGTGIYG DVLQPWPGAW NMAPSEGREG EDAVGGNNIH 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-30	20	109	4	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10025340m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296180.1	1e-132	nuclear transcription factor Y subunit C-8
Swissprot	Q4PSE2	1e-61	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	R0HYD5	1e-131	R0HYD5_9BRAS; Uncharacterized protein
STRING	XP_006296180.1	1e-132	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	8e-59	nuclear factor Y, subunit C8

Link Out ? help Back to Top
Phytozome	Carubv10025340m
Entrez Gene	17888578

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]