PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025274m
Common NameCARUB_v10025274mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 412aa    MW: 46837.8 Da    PI: 9.7265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025274mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-101852551081
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                       l+++ l +  k++++  +  +++++ tl d++g++W ++l +++ +s++ y l++GW++ v  n+L+eg ++ 
  Carubv10025274m 185 FLNEDELEIIDKHFRKK-I--KKGVDFTLVDSNGKKWGLNLrRWDMRSNSnYALASGWNKVVAGNRLEEGQTLQ 255
                      45555565555555333.2..36789***************5556666667*******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037544.5E-36137244IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.105.5E-14147268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-14157266IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.434177274IPR003340B3 DNA binding domain
CDDcd100174.10E-10184261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVRGDDHLEL LRREKRSFDI LSLATERIIR AFSYEEEGET STGVLATVKD NTRKRTRTTM  60
CSSSGKRQKM MIGKCKNQYP KKQNLNRDAC SLSLCHVESK KRGQVVSKKK VRRRKKKKVR  120
RRKMVREREA VQERGPTPEW LVDLMREENG TDVKMIKEKV LVWSDINENE ARLLIPWKGI  180
VDMDFLNEDE LEIIDKHFRK KIKKGVDFTL VDSNGKKWGL NLRRWDMRSN SNYALASGWN  240
KVVAGNRLEE GQTLQIWSFR KVENKVVAGV DRTTDELYVA FAPLDPATSP APAPALSLSL  300
ALVTDPAPAP APVLSLSLAL VRDPTPVVTR DSDELYISKA EAAQEENDRI FPIPEKNLEG  360
LNMLVEVCEK ATHLEALQEA NRRSSLASIT ELDLQRSSLV SDTELDLELR L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107122KKKVRRRKKKKVRRRK
2111117RRRKKKK
3112117RRKKKK
4112120RRKKKKVRR
5116122KKVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025274m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640386.11e-158B3 domain-containing protein At2g31720
TrEMBLR0HUG10.0R0HUG1_9BRAS; Uncharacterized protein
STRINGXP_006296122.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM275656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.11e-15B3 family protein