PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10025224m

Common Name

CARUB_v10025224mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WOX

Protein Properties

Length: 408aa MW: 45353.9 Da PI: 8.8471

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10025224m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.9e-18	53	113	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ Carubv10025224m 53 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 113 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.2	2.7e-36	52	114	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k Carubv10025224m 52 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.689	49	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.02E-12	50	117	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-8	51	118	IPR001356	Homeobox domain
CDD	cd00086	1.50E-8	52	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-6	53	112	IPR009057	Homeodomain-like
Pfam	PF00046	9.7E-16	53	113	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009735	Biological Process	response to cytokinin
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010075	Biological Process	regulation of meristem growth
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP 60 EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRLLHN 120 HSKHSLPQPQ PQPQPQPQQQ PLSSANSASS SSSSSSSSSK STKPRKNKNK NNTNLSLGST 180 QMMGMFPPEA AFLFPVSTVG GFEGIAVSSQ LGFLSGDMTE QQKPAPTLGP CTGLLLSEIM 240 NGSVSYGTHH HQHLSEKEDE EMRMKMLQLP QPQLCYATTS QQISSYNNNN NIMLHVPPTT 300 STTTTITTSH SLATVPSTSD QLQVQAGAKI RVFINEMELE VSPGPFNVRD AFGEEVVLIN 360 SAGQPIVTDE YGVALHPLQH GGSYYLTADL RCKVYLREVG NFDFSSRE

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP  60
EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRLLHN  120
HSKHSLPQPQ PQPQPQPQQQ PLSSANSASS SSSSSSSSSK STKPRKNKNK NNTNLSLGST  180
QMMGMFPPEA AFLFPVSTVG GFEGIAVSSQ LGFLSGDMTE QQKPAPTLGP CTGLLLSEIM  240
NGSVSYGTHH HQHLSEKEDE EMRMKMLQLP QPQLCYATTS QQISSYNNNN NIMLHVPPTT  300
STTTTITTSH SLATVPSTSD QLQVQAGAKI RVFINEMELE VSPGPFNVRD AFGEEVVLIN  360
SAGQPIVTDE YGVALHPLQH GGSYYLTADL RCKVYLREVG NFDFSSRE

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10025224m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118501	0.0	AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21.
GenBank	AY251401	0.0	AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds.
GenBank	BT005296	0.0	BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640265.1	0.0	WUSCHEL-related homeobox 9 isoform X2
Swissprot	Q6X7J4	0.0	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	R0G0R0	0.0	R0G0R0_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006296074.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-112	homeobox-3

Link Out ? help Back to Top
Phytozome	Carubv10025224m
Entrez Gene	17890110

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]