PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025172m | ||||||||
Common Name | CARUB_v10025172mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GRF | ||||||||
Protein Properties | Length: 397aa MW: 43510 Da PI: 8.2788 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.3 | 8.5e-26 | 145 | 189 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e+ Carubv10025172m 145 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVET 189 79****************************************996 PP | |||||||
2 | QLQ | 46.4 | 1.2e-16 | 73 | 105 | 1 | 33 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 s F+ aQ+q+L+ Q+l+y+y++a++ vP+eLl Carubv10025172m 73 SFFSSAQWQELELQALIYRYMLAGATVPQELLS 105 67*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-9 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.857 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.1E-12 | 75 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.046 | 145 | 189 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.5E-22 | 146 | 188 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006995 | Biological Process | cellular response to nitrogen starvation | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0051365 | Biological Process | cellular response to potassium ion starvation | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDLQLKQWRS QQQQQTESEE QPSAAKIPKH VYDQIHSQTP TSTALPLFSP EPSSSKLSSL 60 SPDSSSRFPK MGSFFSSAQW QELELQALIY RYMLAGATVP QELLSLLLPI KKSLLHLSPS 120 YFLHHPLQHL PHYQPAWYLG RAAMDPEPGR CRRTDGKKWR CSRDVFAGHK YCERHMHRGR 180 NRSRKPVETP TAVNATATSM ATAATATATT TTSTFAFGGG SSGDEVAGQG GSFFFSAPSN 240 SSSSELLHLS QSCSEMKQES NNINNKRPYE SHNGFGNHRS DGGHILRPFF DDWPRSSLQE 300 ADNSSSPMSS ATCLSISMPG NSSSDVSLKL STGNEEEARS NHNGRDQQNM SWWSGGGSHH 360 HHNHMGGPLA EALRSSSSSS PTSVLHQLGV STQAFH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025172m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117417 | 0.0 | AK117417.1 Arabidopsis thaliana At2g36400 mRNA for unknown protein, complete cds, clone: RAFL17-02-B13. | |||
GenBank | AY102636 | 0.0 | AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds. | |||
GenBank | BT026472 | 0.0 | BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296027.1 | 0.0 | growth-regulating factor 3 | ||||
Swissprot | Q9SJR5 | 0.0 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | R0HU33 | 0.0 | R0HU33_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296027.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 5e-77 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025172m |
Entrez Gene | 17890081 |
Publications ? help Back to Top | |||
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