PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10025077m | ||||||||
Common Name | CARUB_v10025077mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 31944.6 Da PI: 8.7877 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.8e-06 | 221 | 243 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ + H+ +H Carubv10025077m 221 YTCPKCNNVFDTSQKFAAHMLSH 243 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.07E-5 | 209 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 210 | 244 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0049 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 221 | 248 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MFSNPNMFNI YSDDSINHHE MLHNSQMVQS TFNRMNHEIL FASPLSFSYP QNSNASSPPF 60 HYLMRGNFDS VSGAENSHSS LSPHLTQVPF NQTITNRYTT IIPTNTQFQY DTECVKRSMD 120 SKINRNYVSH PPNFLDSQRE VLSPTPLSVV YPHQDFDDLR HSDMVSMPSK GNHIPQDSRF 180 MKKILKPKIT YYVDSDEDEK SDDDQYDGRT HSISSKKYGP YTCPKCNNVF DTSQKFAAHM 240 LSHYKSENIE EKARRLRARN KNRYCKLTTS LKRSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10025077m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295940.2 | 1e-157 | uncharacterized protein LOC17888798 | ||||
TrEMBL | R0HXM8 | 0.0 | R0HXM8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295940.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42640.1 | 2e-67 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10025077m |
Entrez Gene | 17888798 |