PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024938m
Common NameCARUB_v10024938mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 716aa    MW: 80478.1 Da    PI: 5.7272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024938mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.31e-1123397121373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  v+P+ k++
  Carubv10024938m 339 LRTMLVSCAQAVSINDRRTADDLLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCPFKKIA 429
                      5789**************************************************************9999...9******************** PP

             GRAS  95 hltaNqaIlea..vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       + aN+ I++   +++ +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak++e++++pfe+n+ +a+
  Carubv10024938m 430 IIFANHSIMRLasIANTKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCEKFHIPFEYNA-IAQ 522
                      ********876115666******************************************99*****************************.7** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++e+++le+L++k gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v+       ++n++ F++rf e l +ys+lfd+ +++l+re
  Carubv10024938m 523 KWETIKLEDLKLKDGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIRKIKPDVFMPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLARE 616
                      ********************************************************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                      +  r + E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll+++ +  +++ v+++ ++l++gWk+r +++ S
  Carubv10024938m 617 DPMRLMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKDLVQKLKLLVENGYkTKEFDVDQDCNWLLQGWKGRIVYASS 710
                      ****************************************************************9988999*********************** PP

             GRAS 372 aW 373
                      +W
  Carubv10024938m 711 VW 712
                      ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.155313692IPR005202Transcription factor GRAS
PfamPF035143.5E-110339712IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGSYPAGFPG SLEYWFDFPG LGNGFYLNDQ PLLDTGSVLD VPPPPEPYSQ QHLASADADF  60
SDSVLQYINQ VLMEEDIEDK PCMFHDALSL QAAEKSLYEA LGEKYPPDDD SQPMVPTTRP  120
AQLVSSPSSS SYASSTTTST SSDSQWSFDC LENNRPSSWL QTPIPSNFVF QSTSTKTSPQ  180
SVVGGGGGNA VFGSSYSNDL VSNMFNDSEL ALQFKKGMEE ASKFLPKSSQ LVIDVENFIP  240
EKDNSVPYRL TGKKSNWRED EHLAEERSKK QPAVYVDEAE LTDMFDKILI FGQAEEQPVC  300
ILNESFSKEP VKALSVSKSQ KGEKPAASGN AYTKETPDLR TMLVSCAQAV SINDRRTADD  360
LLSRIRQHSS SYGDGTERLA HYFANSLEAR LAGIGTQVYT ALSSKKTSAS DMLKAYQTYI  420
SVCPFKKIAI IFANHSIMRL ASIANTKTIH IIDFGISYGF QWPSLIHRLA WRRGSSCKLR  480
ITGIELPQRG FRPAEGVIET GHRLAKYCEK FHIPFEYNAI AQKWETIKLE DLKLKDGEFV  540
AVNSLFRFRN LLDETVAVHS PRDAVLKLIR KIKPDVFMPG ILSGSYNAPF FVTRFREVLF  600
HYSSLFDMCD TNLAREDPMR LMFEKEFYGR EIMNVVACEG TERVERPESY KQWQARAMRA  660
GFRQIPLEKD LVQKLKLLVE NGYKTKEFDV DQDCNWLLQG WKGRIVYASS VWVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-463437128374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024938m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639729.10.0scarecrow-like protein 33 isoform X1
RefseqXP_023639730.10.0scarecrow-like protein 33 isoform X1
RefseqXP_023639732.10.0scarecrow-like protein 33 isoform X1
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLR0HTI10.0R0HTI1_9BRAS; Uncharacterized protein
STRINGXP_006295812.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein